refactor: Changed Paths for persistent Data
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Torben Brenner
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4efe356005
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@ -128,8 +128,8 @@ All of the Bridgehead's outgoing connections are secured by transport encryption
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- `/etc/bridgehead/traefik-tls` contains your Bridgehead's reverse proxies TLS certificates for [HTTPS access](#https-access).
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- `/etc/bridgehead/pki` contains your Bridgehead's private key (e.g., but not limited to Samply.Beam), generated as part of the [Samply.Beam enrollment](#register-with-samplybeam).
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- `/etc/bridgehead/trusted-ca-certs` contains third-party certificates to be trusted by the Bridgehead. For example, you want to place the certificates of your [TLS-terminating proxy](#network) here.
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- `/var/data/bridgehead` contains persistent data of the bridgehead
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- `/var/data/bridgehead/backups` contains automatically created backups of the databases.
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- `/var/lib/bridgehead/data` contains persistent data of the bridgehead
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- `/var/cache/bridgehead/backup` contains automatically created backups of the databases.
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Your Bridgehead's actual data is not stored in the above directories, but in named docker volumes, see `docker volume ls` and `docker volume inspect <volume_name>`.
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@ -71,6 +71,6 @@ services:
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POSTGRES_DB: "mainzelliste"
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POSTGRES_PASSWORD: ${PATIENTLIST_POSTGRES_PASSWORD}
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volumes:
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- "/var/data/bridgehead/patientlist:/var/lib/postgresql/data"
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# NOTE: Add backups here. This is only imported if /var/data/bridgehead/patientlist/ is empty!!!
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- "/var/lib/bridgehead/data/patientlist:/var/lib/postgresql/data"
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# NOTE: Add backups here. This is only imported if /var/lib/bridgehead/data/patientlist/ is empty!!!
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- "/tmp/bridgehead/patientlist/:/docker-entrypoint-initdb.d/"
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@ -26,7 +26,7 @@ Upon configuration, the Bridgehead will spawn the following services:
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- The `bridgehead-id-manager` at https://bridgehead.local/id-manager, provides a common interface for creating pseudonyms in the bridgehead.
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- The `bridgehead-patientlist` at https://bridgehead.local/patientlist is a local instance of the open-source software [Mainzelliste](https://mainzelliste.de). This service's primary task is to map patients IDAT to pseudonyms identifying them along the different CCP projects.
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- The `bridgehead-patientlist-db` is only accessible within the Bridgehead itself. This is a local postgresql instance storing the database for `bridgehead-patientlist`. The data is persisted in `/var/data/bridgehead/patientlist` and backups are automatically created in `/var/data/bridgehead/backups/bridgehead-patientlist-db`.
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- The `bridgehead-patientlist-db` is only accessible within the Bridgehead itself. This is a local postgresql instance storing the database for `bridgehead-patientlist`. The data is persisted in `/var/lib/bridgehead/data/patientlist` and backups are automatically created in `/var/cache/bridgehead/backup/bridgehead-patientlist-db`.
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### How to import an existing database (e.g from Legacy Windows or from Backups)
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First you must shutdown your local bridgehead instance:
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@ -36,10 +36,10 @@ systemctl stop bridgehead@ccp
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Next you need to remove the current patientlist database:
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```
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rm -rf /var/data/bridgehead/patientlist
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rm -rf /var/lib/bridgehead/data/patientlist
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```
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Third, you need to place your postgres dump in the import directory `/tmp/bridgehead/patientlist/some-dump.sql`. This will only be imported, then /var/data/bridgehead/patientlist is empty.
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Third, you need to place your postgres dump in the import directory `/tmp/bridgehead/patientlist/some-dump.sql`. This will only be imported, then /var/lib/bridgehead/data/patientlist is empty.
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> NOTE: Please create the postgres dump with the options "--no-owner" and "--no-privileges". Additionally ensure the dump is created in the plain format (SQL).
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After this, you can restart your bridgehead and the dump will be imported:
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@ -24,7 +24,7 @@ services:
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- "traefik.http.routers.mtba.tls=true"
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volumes:
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# This directory persists the FHIR Resources that are needed to import data into blaze.
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- /var/data/bridgehead/mtba:/app/mtba-files/persist
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- /var/lib/bridgehead/data/mtba:/app/mtba-files/persist
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# Place new import files in this directory
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- /tmp/bridgehead/mtba/:/app/mtba-files/input
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@ -22,8 +22,8 @@ Cmnd_Alias BRIDGEHEAD${PROJECT^^} = \\
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/bin/systemctl stop bridgehead@${PROJECT}.service, \\
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/bin/systemctl restart bridgehead@${PROJECT}.service, \\
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/bin/systemctl restart bridgehead@*.service, \\
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/bin/chown -R bridgehead /etc/bridgehead /srv/docker/bridgehead /var/data/bridgehead, \\
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/usr/bin/chown -R bridgehead /etc/bridgehead /srv/docker/bridgehead /var/data/bridgehead
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/bin/chown -R bridgehead /etc/bridgehead /srv/docker/bridgehead /var/lib/bridgehead /var/cache/bridgehead, \\
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/usr/bin/chown -R bridgehead /etc/bridgehead /srv/docker/bridgehead /var/lib/bridgehead /var/cache/bridgehead
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bridgehead ALL= NOPASSWD: BRIDGEHEAD${PROJECT^^}
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EOF
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@ -37,9 +37,14 @@ if [ -z "$LDM_PASSWORD" ]; then
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echo -e "## Local Data Management Basic Authentication\n# User: $PROJECT\nLDM_PASSWORD=$generated_passwd" >> /etc/bridgehead/${PROJECT}.local.conf;
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fi
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log "INFO" "Creating directory /var/data/bridgehead for storage of persistent data."
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mkdir -p /var/data/bridgehead
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chown -R bridgehead /var/data/bridgehead
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log "INFO" "Creating directory /var/lib/bridgehead for storage of persistent data."
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mkdir -p /var/lib/bridgehead
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chown -R bridgehead /var/lib/bridgehead
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log "INFO" "Creating directory /var/cache/bridgehead for storage of backups."
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mkdir -p /var/cache/bridgehead
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chown -R bridgehead /var/cache/bridgehead
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log "INFO" "Registering system units for bridgehead and bridgehead-update"
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cp -v \
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@ -4,15 +4,7 @@ source lib/functions.sh
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AUTO_BACKUP=${AUTO_BACKUP:-true}
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if [ "$AUTO_BACKUP" == "true" ]; then
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BACKUP_DIRECTORY="/var/data/bridgehead/backups"
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if [ ! -d /var/data ]; then
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log DEBUG "Created /var/data"
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mkdir /var/data
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fi
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if [ ! -d /var/data/bridgehead ]; then
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log DEBUG "Created /var/data/bridgehead"
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mkdir /var/data/bridgehead
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fi
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BACKUP_DIRECTORY="/var/cache/bridgehead/backup"
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if [ ! -d $BACKUP_DIRECTORY ]; then
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message="Performing automatic maintenance: Creating Backup directory $BACKUP_DIRECTORY."
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hc_send log "$message"
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