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update docker and host paths

This commit is contained in:
p.delpy@dkfz-heidelberg.de 2023-01-18 13:42:36 +01:00 committed by Torben Brenner
parent e2d90447f7
commit bce28342f9
1 changed files with 4 additions and 4 deletions
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8
ccp/mtba-compose.yml
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@ -17,16 +17,16 @@ services:
PATIENT_CSV_BIRTHDAY_HEADER: ${PATIENT_CSV_BIRTHDAY_HEADER:-"BIRTHDAY"} PATIENT_CSV_BIRTHDAY_HEADER: ${PATIENT_CSV_BIRTHDAY_HEADER:-"BIRTHDAY"}
CBIOPORTAL_URL: http://bridgehead-ccp-cbioportal:8080 CBIOPORTAL_URL: http://bridgehead-ccp-cbioportal:8080
MUTATIONS_CSV_SCRIPT_INTERPRETER: "python3" MUTATIONS_CSV_SCRIPT_INTERPRETER: "python3"
NEW_FILES_DIRECTORY: "/app/input"
PERSIST_DIRECTORY: "/app/persist"
labels: labels:
- "traefik.enable=true" - "traefik.enable=true"
- "traefik.http.routers.mtba.rule=PathPrefix(`/`)" - "traefik.http.routers.mtba.rule=PathPrefix(`/`)"
- "traefik.http.services.mtba.loadbalancer.server.port=80" - "traefik.http.services.mtba.loadbalancer.server.port=80"
- "traefik.http.routers.mtba.tls=true" - "traefik.http.routers.mtba.tls=true"
volumes: volumes:
# This directory persists the FHIR Resources that are needed to import data into blaze. - /tmp/bridgehead/mtba/input:/app/input
- mtba-data:/app/mtba-files/persist - /tmp/bridgehead/mtba/persist:/app/persist
# Place new import files in this directory
- /tmp/bridgehead/mtba/:/app/mtba-files/input
# TODO: Include CBioPortal in Deployment ... # TODO: Include CBioPortal in Deployment ...
# NOTE: CBioPortal can't load data while the system is running. So after import of data bridgehead needs to be restarted! # NOTE: CBioPortal can't load data while the system is running. So after import of data bridgehead needs to be restarted!