update docker and host paths
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@ -17,16 +17,16 @@ services:
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PATIENT_CSV_BIRTHDAY_HEADER: ${PATIENT_CSV_BIRTHDAY_HEADER:-"BIRTHDAY"}
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CBIOPORTAL_URL: http://bridgehead-ccp-cbioportal:8080
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MUTATIONS_CSV_SCRIPT_INTERPRETER: "python3"
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NEW_FILES_DIRECTORY: "/app/input"
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PERSIST_DIRECTORY: "/app/persist"
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labels:
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- "traefik.enable=true"
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- "traefik.http.routers.mtba.rule=PathPrefix(`/`)"
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- "traefik.http.services.mtba.loadbalancer.server.port=80"
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- "traefik.http.routers.mtba.tls=true"
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volumes:
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# This directory persists the FHIR Resources that are needed to import data into blaze.
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- mtba-data:/app/mtba-files/persist
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# Place new import files in this directory
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- /tmp/bridgehead/mtba/:/app/mtba-files/input
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- /tmp/bridgehead/mtba/input:/app/input
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- /tmp/bridgehead/mtba/persist:/app/persist
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# TODO: Include CBioPortal in Deployment ...
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# NOTE: CBioPortal can't load data while the system is running. So after import of data bridgehead needs to be restarted!
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