diff --git a/ccp/mtba-compose.yml b/ccp/mtba-compose.yml index 857ff34..bb90059 100644 --- a/ccp/mtba-compose.yml +++ b/ccp/mtba-compose.yml @@ -5,28 +5,28 @@ services: image: samply/mtba:develop container_name: bridgehead-mtba environment: - BLAZE_STORE_URL: http://bridgehead-ccp-blaze:8080/fhir + BLAZE_STORE_URL: http://blaze:8080 # NOTE: Aktuell Berechtigungen wie MagicPL!!! # TODO: Add separate ApiKey to MagicPL only for MTBA! ID_MANAGER_API_KEY: ${IDMANAGER_UPLOAD_APIKEY} ID_MANAGER_PSEUDONYM_ID_TYPE: BK_${IDMANAGEMENT_FRIENDLY_ID}_L-ID - ID_MANAGER_URL: http://bridgehead-id-manager:8080 - PATIENT_CSV_FIRST_NAME_HEADER: ${PATIENT_CSV_FIRST_NAME_HEADER:-"FIRST_NAME"} - PATIENT_CSV_LAST_NAME_HEADER: ${PATIENT_CSV_LAST_NAME_HEADER:-"LAST_NAME"} - PATIENT_CSV_GENDER_HEADER: ${PATIENT_CSV_GENDER_HEADER:-"GENDER"} - PATIENT_CSV_BIRTHDAY_HEADER: ${PATIENT_CSV_BIRTHDAY_HEADER:-"BIRTHDAY"} - CBIOPORTAL_URL: http://bridgehead-ccp-cbioportal:8080 - MUTATIONS_CSV_SCRIPT_INTERPRETER: "python3" + ID_MANAGER_URL: http://id-manager:8080/id-manager + PATIENT_CSV_FIRST_NAME_HEADER: ${MTBA_PATIENT_CSV_FIRST_NAME_HEADER} + PATIENT_CSV_LAST_NAME_HEADER: ${MTBA_PATIENT_CSV_LAST_NAME_HEADER} + PATIENT_CSV_GENDER_HEADER: ${MTBA_PATIENT_CSV_GENDER_HEADER} + PATIENT_CSV_BIRTHDAY_HEADER: ${MTBA_PATIENT_CSV_BIRTHDAY_HEADER} + CBIOPORTAL_URL: http://cbioportal:8080 + FILE_CHARSET: ${MTBA_FILE_CHARSET} + FILE_END_OF_LINE: ${MTBA_FILE_END_OF_LINE} + CSV_DELIMITER: ${MTBA_CSV_DELIMITER} labels: - "traefik.enable=true" - "traefik.http.routers.mtba.rule=PathPrefix(`/`)" - "traefik.http.services.mtba.loadbalancer.server.port=80" - "traefik.http.routers.mtba.tls=true" volumes: - # This directory persists the FHIR Resources that are needed to import data into blaze. - - mtba-data:/app/mtba-files/persist - # Place new import files in this directory - - /tmp/bridgehead/mtba/:/app/mtba-files/input + - /tmp/bridgehead/mtba/input:/app/input + - /tmp/bridgehead/mtba/persist:/app/persist # TODO: Include CBioPortal in Deployment ... # NOTE: CBioPortal can't load data while the system is running. So after import of data bridgehead needs to be restarted!