Updated Readme and c4 docker file

README.md

@@ -2,12 +2,33 @@
 
 This repository contains all information and tools to deploy a bridgehead. If you have any questions about deploying a bridgehead, please contact us.
 
-There are some prerequisites, which need to be meet befor starting a bridgehead.
+There are some prerequisites, which need to be meet befor starting a bridgehead. If you runnig a Windows or Mac OS maschine you should read starting a bridgehead. If you running a Linux maschine you can do start and install a bridgehead.
+
+## Starting
+
+
+## Install
+
+Create the dir /src/docker and clone the repository.
 
 The first step is to copy the site.conf file. It contains some configuration and secrets for your bridgehead.
 
 With cp site.dev.conf site.conf you can clone the template. You need to set the project accoriding to the which bridgehead you want to start. It's either a GBN/BBMRI-ERIC, DKTK or C4 Bridgehead.
 
+In this file you can put important varibales
+
+### DKTK
+
+### GBA/BBMRI-ERIC
+
+### C4
+
+The following vairbales need to be set
+
+C4_SAMPLY_STORE_PASS
+C4_CONNECTOR_POSTGRES_PASSWORD
+
+
 The next step is creating a configuration for your bridghead. We can provide you a configuration git repository for bridgehead, just ask us. When you have a DKTK or C4 Bridgehead you propably need some configuration from us anyways.
 
 git submodule add -f https://"$git_username":"$git_access_token"@code.mitro.dkfz.de/scm/bd/"$site_name_lowercase"-config.git ./site-config

c4/docker-compose.yml

@@ -1,12 +1,12 @@
 version: "3.7"
 volumes:
-  connector_db_data: 
-  connector_logs: 
-  patientlist_db_data: 
-  patientlist_logs: 
-  idmanager_logs: 
-  store_db_data: 
-  store_logs: 
+  connector_db_data: null
+  connector_logs: null
+  patientlist_db_data: null
+  patientlist_logs: null
+  idmanager_logs: null
+  store_db_data: null
+  store_logs: null
 secrets:
   mainzelliste.docker.conf:
     file: ./internal-configuration/mainzelliste.conf
@@ -105,7 +105,7 @@ services:
     depends_on:
       - patientlist
 
-store:
+  store:
     container_name: bridgehead_store
     image: docker.verbis.dkfz.de/ccp/samply.store:release-5.1.2
     environment:

gbn/gbn.env.dev

@@ -1,2 +1,64 @@
-GBN_CONNECTOR_POSTGRES_PASS=samply
+SITE=
+SITEID=
+TESTPROD=
 
+project=gbn
+
+### Bridgehead Operator
+# users may see this contact data for support purposes
+OPERATOR_FIRST_NAME=
+OPERATOR_LAST_NAME=
+OPERATOR_EMAIL=
+OPERATOR_PHONE=
+
+### Proxy configuration
+## ex.: http://my-proxy-host:my-proxy-port
+HTTP_PROXY_HOST=
+HTTP_PROXY_USER=
+HTTP_PROXY_PASSWORD=
+HTTPS_PROXY_HOST=
+HTTPS_PROXY_USER=
+HTTPS_PROXY_PASSWORD=
+
+HTTP_PROXY=
+HTTPS_PROXY=
+http_proxy=
+https_proxy=
+
+NO_PROXY=
+no_proxy=
+
+### SMTP Server
+## ex.: mailhost.intern.klinik.de
+# MAIL_HOST=
+# MAIL_PORT=25
+## ex.: no-reply@bridgehead.intern.klinik.de
+# MAIL_FROM_ADDRESS=
+# MAIL_FROM_NAME=Bridgehead Searchbroker
+
+## Connector 
+CONNECTOR_POSTGRES_HOST=
+CONNECTOR_POSTGRES_PORT=
+CONNECTOR_POSTGRES_DB=
+CONNECTOR_POSTGRES_USER=
+CONNECTOR_SHARE_URL=
+CONNECTOR_ENABLE_METRICS=
+CONNECTOR_MONITOR_INTERVAL=
+CONNECTOR_UPDATE_SERVER=
+CONNECTOR_QUERY_LANGUAGE=
+
+CATALINA_OPTS=
+MDR_URL=
+CENTRAL_SEARCH=
+DECENTRAL_SEARCH=
+MONITOR_URL=
+MONITOR_OPTOUT=
+
+LOG_LEVEL=
+
+feature_BBMRI_DIRECTORY_SYNC=false
+feature_DKTK_CENTRAL_SEARCH=false
+feature_NNGM_CTS=false
+
+LDM_URL=
+ID_MANAGER_URL=