version: "3.7" services: mtba: image: samply/mtba:develop container_name: bridgehead-mtba environment: BLAZE_STORE_URL: http://bridgehead-ccp-blaze:8080/fhir # NOTE: Aktuell Berechtigungen wie MagicPL!!! # TODO: Add separate ApiKey to MagicPL only for MTBA! ID_MANAGER_API_KEY: ${IDMANAGER_UPLOAD_APIKEY} ID_MANAGER_PSEUDONYM_ID_TYPE: BK_${IDMANAGEMENT_FRIENDLY_ID}_L-ID ID_MANAGER_URL: http://bridgehead-id-manager:8080 PATIENT_CSV_FIRST_NAME_HEADER: ${PATIENT_CSV_FIRST_NAME_HEADER:-"FIRST_NAME"} PATIENT_CSV_LAST_NAME_HEADER: ${PATIENT_CSV_LAST_NAME_HEADER:-"LAST_NAME"} PATIENT_CSV_GENDER_HEADER: ${PATIENT_CSV_GENDER_HEADER:-"GENDER"} PATIENT_CSV_BIRTHDAY_HEADER: ${PATIENT_CSV_BIRTHDAY_HEADER:-"BIRTHDAY"} CBIOPORTAL_URL: http://bridgehead-ccp-cbioportal:8080 MUTATIONS_CSV_SCRIPT_INTERPRETER: "python3" NEW_FILES_DIRECTORY: "/app/input" PERSIST_DIRECTORY: "/app/persist" labels: - "traefik.enable=true" - "traefik.http.routers.mtba.rule=PathPrefix(`/`)" - "traefik.http.services.mtba.loadbalancer.server.port=80" - "traefik.http.routers.mtba.tls=true" volumes: - /tmp/bridgehead/mtba/input:/app/input - /tmp/bridgehead/mtba/persist:/app/persist # TODO: Include CBioPortal in Deployment ... # NOTE: CBioPortal can't load data while the system is running. So after import of data bridgehead needs to be restarted! # TODO: Find a trigger to let mtba signal a restart for CBioPortal volumes: mtba-data: