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Merge pull request #202 from samply/main_fix_dirsync_passwd 

Fixed environment variable passing for Directory sync
This commit is contained in:
Martin Lablans 2024-08-15 13:43:39 +02:00 committed by GitHub
parent bff316cde1 18c9e1bb30
commit 25e1d4fb15
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2 changed files with 12 additions and 11 deletions
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9
README.md
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@ -306,15 +306,12 @@ Full details can be found in [directory_sync_service](https://github.com/samply/
To enable it, you will need to set these variables to the ```bbmri.conf``` file of your GitLab repository. Here is an example config:
```
DS_DIRECTORY_URL=https://directory.bbmri-eric.eu
DS_DIRECTORY_USER_NAME=your_directory_username
DS_DIRECTORY_USER_PASS=qwdnqwswdvqHBVGFR9887
DS_DIRECTORY_ALLOW_STAR_MODEL=true
DS_TIMER_CRON="0 22 * * *"
DS_DIRECTORY_USER_PASS=your_directory_password
```
You must contact the Directory team for your national node to find the URL, and to register as a user.
Please contact your National Node to obtain this information.
Additionally, you should choose when you want Directory sync to run. In the example above, this is set to happen at 10 pm every evening. You can modify this to suit your requirements. The timer specification should follow the [cron](https://crontab.guru) convention.
Optionally, you **may** change when you want Directory sync to run by specifying a [cron](https://crontab.guru) expression, e.g. `DS_TIMER_CRON="0 22 * * *"` for 10 pm every evening.
Once you edited the gitlab config, the bridgehead will autoupdate the config with the values and will sync the data.

14
bbmri/modules/directory-sync-compose.yml
View File

@ -4,9 +4,13 @@ services:
directory_sync_service:
image: "docker.verbis.dkfz.de/cache/samply/directory_sync_service"
environment:
DS_DIRECTORY_URL: ${DS_DIRECTORY_URL}
DS_DIRECTORY_URL: ${DS_DIRECTORY_URL:-https://directory.bbmri-eric.eu}
DS_DIRECTORY_USER_NAME: ${DS_DIRECTORY_USER_NAME}
DS_DIRECTORY_PASS_CODE: ${DS_DIRECTORY_PASS_CODE}
DS_TIMER_CRON: ${DS_TIMER_CRON}
# It is recommended to check the enabling of this flag with your local data protection group
DS_DIRECTORY_ALLOW_STAR_MODEL: ${DS_DIRECTORY_ALLOW_STAR_MODEL}
DS_DIRECTORY_USER_PASS: ${DS_DIRECTORY_USER_PASS}
DS_TIMER_CRON: ${DS_TIMER_CRON:-0 22 * * *}
DS_DIRECTORY_ALLOW_STAR_MODEL: ${DS_DIRECTORY_ALLOW_STAR_MODEL:-true}
DS_DIRECTORY_MOCK: ${DS_DIRECTORY_MOCK}
DS_DIRECTORY_DEFAULT_COLLECTION_ID: ${DS_DIRECTORY_DEFAULT_COLLECTION_ID}
DS_DIRECTORY_COUNTRY: ${DS_DIRECTORY_COUNTRY}
depends_on:
- "blaze"