feature: upgrade to oBDS2FHIR

This commit is contained in:
Pierre Delpy 2024-07-01 12:46:33 +02:00
parent e28b125b93
commit 2ee8e0185a
5 changed files with 26 additions and 25 deletions

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@ -1,18 +0,0 @@
version: "3.7"
services:
adt2fhir-rest:
container_name: bridgehead-adt2fhir-rest
image: docker.verbis.dkfz.de/ccp/adt2fhir-rest:main
environment:
IDTYPE: BK_${IDMANAGEMENT_FRIENDLY_ID}_L-ID
MAINZELLISTE_APIKEY: ${IDMANAGER_LOCAL_PATIENTLIST_APIKEY}
SALT: ${LOCAL_SALT}
restart: always
labels:
- "traefik.enable=true"
- "traefik.http.routers.adt2fhir-rest.rule=PathPrefix(`/adt2fhir-rest`)"
- "traefik.http.middlewares.adt2fhir-rest_strip.stripprefix.prefixes=/adt2fhir-rest"
- "traefik.http.services.adt2fhir-rest.loadbalancer.server.port=8080"
- "traefik.http.routers.adt2fhir-rest.tls=true"
- "traefik.http.routers.adt2fhir-rest.middlewares=adt2fhir-rest_strip,auth"

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@ -5,7 +5,6 @@ function mtbaSetup() {
log INFO "MTBA setup detected -- will start MTBA Service and CBioPortal."
if [ ! -n "$IDMANAGER_UPLOAD_APIKEY" ]; then
log ERROR "Missing ID-Management Module! Fix this by setting up ID Management:"
exit 1;
fi
OVERRIDE+=" -f ./$PROJECT/modules/mtba-compose.yml"
add_private_oidc_redirect_url "/mtba/*"

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@ -0,0 +1,20 @@
version: "3.7"
services:
obds2fhir-rest:
container_name: bridgehead-obds2fhir-rest
image: docker.verbis.dkfz.de/ccp/obds2fhir-rest:main
environment:
IDTYPE: BK_${IDMANAGEMENT_FRIENDLY_ID}_L-ID
MAINZELLISTE_APIKEY: ${IDMANAGER_LOCAL_PATIENTLIST_APIKEY}
SALT: ${LOCAL_SALT}
KEEP_INTERNAL_ID: ${KEEP_INTERNAL_ID:-false}
MAINZELLISTE_URL: ${PATIENTLIST_URL:-"http://patientlist:8080/patientlist"}
restart: always
labels:
- "traefik.enable=true"
- "traefik.http.routers.obds2fhir-rest.rule=PathPrefix(`/obds2fhir-rest`) || PathPrefix(`/adt2fhir-rest`)"
- "traefik.http.middlewares.obds2fhir-rest_strip.stripprefix.prefixes=/obds2fhir-rest,/adt2fhir-rest"
- "traefik.http.services.obds2fhir-rest.loadbalancer.server.port=8080"
- "traefik.http.routers.obds2fhir-rest.tls=true"
- "traefik.http.routers.obds2fhir-rest.middlewares=obds2fhir-rest_strip,auth"

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@ -1,13 +1,13 @@
#!/bin/bash
function adt2fhirRestSetup() {
if [ -n "$ENABLE_ADT2FHIR_REST" ]; then
log INFO "ADT2FHIR-REST setup detected -- will start adt2fhir-rest API."
function obds2fhirRestSetup() {
if [ -n "$ENABLE_OBDS2FHIR_REST" ]; then
log INFO "oBDS2FHIR-REST setup detected -- will start obds2fhir-rest module."
if [ ! -n "$IDMANAGER_LOCAL_PATIENTLIST_APIKEY" ]; then
log ERROR "Missing ID-Management Module! Fix this by setting up ID Management:"
exit 1;
PATIENTLIST_URL=" "
fi
OVERRIDE+=" -f ./$PROJECT/modules/adt2fhir-rest-compose.yml"
OVERRIDE+=" -f ./$PROJECT/modules/obds2fhir-rest-compose.yml"
LOCAL_SALT="$(echo \"local-random-salt\" | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
fi
}

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@ -28,4 +28,4 @@ done
idManagementSetup
mtbaSetup
adt2fhirRestSetup
obds2fhirRestSetup