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clean up

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This commit is contained in:
Martin Jurk
2026-02-16 10:31:54 +01:00
parent d8a1920ef9
commit 4658a115c2
2 changed files with 13 additions and 13 deletions
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4
itcc/docker-compose.yml
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@@ -32,7 +32,7 @@ services:
BEAM_PROXY_URL: http://beam-proxy:8081 BEAM_PROXY_URL: http://beam-proxy:8081
RETRY_COUNT: ${FOCUS_RETRY_COUNT} RETRY_COUNT: ${FOCUS_RETRY_COUNT}
EPSILON: 0.28 EPSILON: 0.28
QUERIES_TO_CACHE: '/queries_to_cache.conf' QUERIES_TO_CACHE: "/queries_to_cache.conf"
ENDPOINT_TYPE: ${FOCUS_ENDPOINT_TYPE:-blaze} ENDPOINT_TYPE: ${FOCUS_ENDPOINT_TYPE:-blaze}
volumes: volumes:
- /srv/docker/bridgehead/itcc/queries_to_cache.conf:/queries_to_cache.conf:ro - /srv/docker/bridgehead/itcc/queries_to_cache.conf:/queries_to_cache.conf:ro
@@ -47,6 +47,7 @@ services:
BROKER_URL: ${BROKER_URL} BROKER_URL: ${BROKER_URL}
PROXY_ID: ${PROXY_ID} PROXY_ID: ${PROXY_ID}
APP_focus_KEY: ${FOCUS_BEAM_SECRET_SHORT} APP_focus_KEY: ${FOCUS_BEAM_SECRET_SHORT}
APP_omics-endpoint_KEY: ${FOCUS_BEAM_SECRET_SHORT}
PRIVKEY_FILE: /run/secrets/proxy.pem PRIVKEY_FILE: /run/secrets/proxy.pem
ALL_PROXY: http://forward_proxy:3128 ALL_PROXY: http://forward_proxy:3128
TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
@@ -59,7 +60,6 @@ services:
- /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro - /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
- /srv/docker/bridgehead/itcc/root.crt.pem:/conf/root.crt.pem:ro - /srv/docker/bridgehead/itcc/root.crt.pem:/conf/root.crt.pem:ro
volumes: volumes:
blaze-data: blaze-data:

22
itcc/modules/itcc-omics-ingest.yaml
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@@ -1,17 +1,17 @@
services: services:
omics-endpoint: omics-endpoint:
image: ghcr.io/samply/itcc-omics-ingest:hotfix-docker image: ghcr.io/samply/itcc-omics-ingest:data-lake-s3
environment: environment:
- API_KEY=${GENERATE_API_KEY} API_KEY: ${GENERATE_API_KEY}
- RUST_LOG=debug RUST_LOG: debug
- BEAM_ID=app1.proxy1.broker BEAM_ID: "omics-endpoint.${PROXY_ID}"
- BEAM_SECRET="${FOCUS_BEAM_SECRET_SHORT}" BEAM_SECRET: "${FOCUS_BEAM_SECRET_SHORT}"
- BEAM_URL=http://beam-proxy:8081 BEAM_URL: http://beam-proxy:8081
- ML_URL=http://mainzelliste:8080 ML_URL: http://mainzelliste:8080
- BLAZE_URL="http://bridgehead-itcc-blaze:8080/fhir/" BLAZE_URL: http://bridgehead-itcc-blaze:8080/fhir/
- DATA_LAKE_ID="${DATA_LAKE_ID}" DATA_LAKE_ID: "${DATA_LAKE_ID}"
- PARTNER_ID=itcc-inform PARTNER_ID: itcc-inform
- ML_API_KEY=${GENERATE_API_KEY} ML_API_KEY: ${GENERATE_API_KEY}
volumes: volumes:
- /var/cache/bridgehead/omics/data:/data/uploads - /var/cache/bridgehead/omics/data:/data/uploads