mirror of https://github.com/samply/bridgehead.git
Add Opal
This commit is contained in:
juarez
parent
dc4829bd5f
commit
6bb922fa99
|
|
@ -0,0 +1,79 @@
|
|||
version: "3.7"
|
||||
|
||||
services:
|
||||
|
||||
############################################ DataSHIELD Client (Rocker R-Studio)
|
||||
rstudio:
|
||||
image: docker.verbis.dkfz.de/dktk/bridgehead-rstudio:latest
|
||||
container_name: bridgehead-rstudio
|
||||
#TODO: Connect with Keycloak: https://rocker-project.org/images/versioned/rstudio.html
|
||||
environment:
|
||||
USER: "ruser"
|
||||
PASSWORD: "${RSTUDIO_PASSWORD}"
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.login.rule=PathPrefix(`/rstudio`)"
|
||||
- "traefik.http.services.login.loadbalancer.server.port=8787"
|
||||
- "traefik.http.routers.login.tls=true"
|
||||
volumes:
|
||||
- "rstudio-config:/home/rstudio/.config/rstudio"
|
||||
- "rstudio-workspace:/home/rstudio/workspace"
|
||||
- "rstudio-user-files:/home/user-files"
|
||||
|
||||
############################################ DataSHIELD Server (Opal)
|
||||
opal:
|
||||
image: obiba/opal:4.5
|
||||
container_name: bridgehead-opal
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.login.rule=PathPrefix(`/opal`)"
|
||||
- "traefik.http.services.login.loadbalancer.server.port=8080" #TODO: HTTPS -> 8443
|
||||
- "traefik.http.routers.login.tls=true"
|
||||
links:
|
||||
- opal-rserver
|
||||
- opal-mongo
|
||||
- opal-db
|
||||
environment:
|
||||
JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
|
||||
# OPAL_ADMINISTRATOR_USER: "administrator"
|
||||
OPAL_ADMINISTRATOR_PASSWORD: "${OPAL_ADMINISTRATOR_PASSWORD}"
|
||||
MONGO_HOST: "opal-mongo"
|
||||
MONGO_PORT: "27017"
|
||||
POSTGRESDATA_HOST: "opal-db"
|
||||
POSTGRESDATA_DATABASE: "opal"
|
||||
POSTGRESDATA_USER: "opal"
|
||||
POSTGRESDATA_PASSWORD: "${OPAL_DB_PASSWORD}"
|
||||
|
||||
ROCK_HOSTS: "opal-rserver:8085"
|
||||
volumes:
|
||||
- "opal:/srv"
|
||||
|
||||
opal-mongo: # IDs
|
||||
image: mongo:4.2 # TODO: Update mongo:6.0.4
|
||||
container_name: bridgehead-opal-mongo
|
||||
|
||||
opal-db: # Data
|
||||
image: postgres:15.1
|
||||
container_name: bridgehead-opal-db
|
||||
environment:
|
||||
POSTGRES_PASSWORD: "${OPAL_DB_PASSWORD}"
|
||||
POSTGRES_USER: "opal"
|
||||
POSTGRES_DB: "opal"
|
||||
volumes:
|
||||
- "opal-db:/var/lib/postgresql/data"
|
||||
|
||||
opal-rserver:
|
||||
image: datashield/rock-base:6.2-R4.2 # https://datashield.discourse.group/t/ds-aggregate-method-error/416/4
|
||||
container_name: bridgehead-opal-rserver
|
||||
|
||||
volumes:
|
||||
rstudio-config:
|
||||
name: "rstudio-config"
|
||||
rstudio-workspace:
|
||||
name: "rstudio-workspace"
|
||||
rstudio-user-files:
|
||||
name: "rstudio-user-files"
|
||||
opal-db:
|
||||
name: "opal-db"
|
||||
opal:
|
||||
name: "opal"
|
||||
|
|
@ -0,0 +1,7 @@
|
|||
#!/bin/bash
|
||||
|
||||
if [ "$ENABLE_OPAL" == true ];then
|
||||
log INFO "Opal setup detected -- will start Opal services."
|
||||
OVERRIDE+=" -f ./$PROJECT/modules/opal-compose.yml"
|
||||
fi
|
||||
OPAL_DB_PASSWORD="$(echo \"This is a salt string to generate one consistent password. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
|
||||
|
|
@ -241,26 +241,26 @@ services:
|
|||
TEILER_APP24_INMENU: "false"
|
||||
TEILER_APP25_NAME: "dialog-tests"
|
||||
TEILER_APP25_INMENU: "false"
|
||||
# TEILER_APP26_NAME: "opal"
|
||||
# TEILER_APP26_TITLE: "Opal"
|
||||
# TEILER_APP26_DESCRIPTION: "Opal is OBiBa’s core database application for biobanks."
|
||||
# TEILER_APP26_SOURCEURL: "http://localhost:8880"
|
||||
# TEILER_APP26_ROLES: "TEILER_USER"
|
||||
# TEILER_APP26_ISACTIVATED: "true"
|
||||
# TEILER_APP26_ICONSOURCEURL: "https://www.obiba.org/assets/themes/bootstrap/img/obiba-logo-small.png"
|
||||
# TEILER_APP26_ORDER: "19"
|
||||
# TEILER_APP26_ISEXTERNALLINK: "true"
|
||||
# TEILER_APP26_ISLOCAL: "true"
|
||||
# TEILER_APP27_NAME: "rstudio"
|
||||
# TEILER_APP27_TITLE: "R Studio"
|
||||
# TEILER_APP27_DESCRIPTION: "RStudio is an integrated development environment (IDE) for R and Python."
|
||||
# TEILER_APP27_SOURCEURL: "http://localhost:8787"
|
||||
# TEILER_APP27_ROLES: "TEILER_USER"
|
||||
# TEILER_APP27_ISACTIVATED: "true"
|
||||
# TEILER_APP27_ICONSOURCEURL: "https://rstudio.com/wp-content/uploads/2018/10/RStudio-Logo-Flat.png"
|
||||
# TEILER_APP27_ORDER: "20"
|
||||
# TEILER_APP27_ISEXTERNALLINK: "true"
|
||||
# TEILER_APP27_ISLOCAL: "true"
|
||||
TEILER_APP26_NAME: "opal"
|
||||
TEILER_APP26_TITLE: "Opal"
|
||||
TEILER_APP26_DESCRIPTION: "Opal is OBiBa’s core database application for biobanks."
|
||||
TEILER_APP26_SOURCEURL: "https://${HOST}/opal"
|
||||
TEILER_APP26_ROLES: "TEILER_USER"
|
||||
TEILER_APP26_ISACTIVATED: "true"
|
||||
TEILER_APP26_ICONSOURCEURL: "https://www.obiba.org/assets/themes/bootstrap/img/obiba-logo-small.png"
|
||||
TEILER_APP26_ORDER: "19"
|
||||
TEILER_APP26_ISEXTERNALLINK: "true"
|
||||
TEILER_APP26_ISLOCAL: "true"
|
||||
TEILER_APP27_NAME: "rstudio"
|
||||
TEILER_APP27_TITLE: "R Studio"
|
||||
TEILER_APP27_DESCRIPTION: "RStudio is an integrated development environment (IDE) for R and Python."
|
||||
TEILER_APP27_SOURCEURL: "https://${HOST}/rstudio"
|
||||
TEILER_APP27_ROLES: "TEILER_USER"
|
||||
TEILER_APP27_ISACTIVATED: "true"
|
||||
TEILER_APP27_ICONSOURCEURL: "https://rstudio.com/wp-content/uploads/2018/10/RStudio-Logo-Flat.png"
|
||||
TEILER_APP27_ORDER: "20"
|
||||
TEILER_APP27_ISEXTERNALLINK: "true"
|
||||
TEILER_APP27_ISLOCAL: "true"
|
||||
|
||||
volumes:
|
||||
login-db:
|
||||
|
|
|
|||
Loading…
Reference in New Issue