Clean up ccp/vars by removing commented settings

Removed extensive comments and configuration settings for the OVIS Bridgehead Module from ccp/vars.
This commit is contained in:
tm16-medma
2026-03-17 20:54:17 +01:00
committed by GitHub
parent b2865d1b4d
commit 8cdf139319
-133
View File
@@ -23,139 +23,6 @@ do
source $module source $module
done done
# ========================================
# OVIS Bridgehead Module Configuration
# ========================================
# Copy this file to ccp/vars and customize for your site.
# This module supports CCP (FHIR-based) or DEMO (bundled data) import modes.
# ========================================
# Enable OVIS module
ENABLE_OVIS=
# ========================================
# IMPORT MODE
# ========================================
# Set to "ccp" for FHIR-based Clinical Cancer Profile import
# Set to "demo" for bundled demo data (no external dependencies)
OVIS_IMPORT_MODE=demo
# ========================================
# ROUTING / TRAEFIK
# ========================================
# Hostname for OVIS access
HOST=localhost
# Traefik middleware for authentication
OVIS_AUTH_MIDDLEWARE=traefik-forward-auth
# CORS origin for backend
OVIS_CORS_ORIGIN=*
# ========================================
# CORE RUNTIME
# ========================================
APOLLO_PORT=4001
CREDOS_PORT=4000
DB=onc_test
MONGO_VER=latest
# Frontend login toggle
PUBLIC_LOGIN_ENABLED=false
# ========================================
# CCP IMPORTER / FHIR SOURCE
# ========================================
# Only required when OVIS_IMPORT_MODE=ccp
# FHIR server URL (defaults to Bridgehead CCP Blaze)
FHIR_SERVER_URL=http://bridgehead-ccp-blaze:8080/fhir
FHIR_USERNAME=your-fhir-username
FHIR_PASSWORD=your-fhir-password
# Optional ICD10 filter for CCP import
ICD10_FILTER=
# ========================================
# PREPROCESSOR ENDPOINT
# ========================================
# URL for uploading omock.json to preprocessing service
# Uses Bridgehead service name (different from main compose default)
OVIS_PREPROCESSOR_URL=http://ovis-backend-data-preprocessing:9000/omock
# ========================================
# FRONTEND RUNTIME
# ========================================
# Catalogue upstream URL (uses Bridgehead service name)
OVIS_CATALOGUE_UPSTREAM_URL=http://ovis-backend-data-preprocessing:9000/catalogue
# Express auth configuration
EXPRESS_AUTH_URL=http://express-auth:5000
EXPRESS_AUTH_USERNAME=your-express-username
EXPRESS_AUTH_PASSWORD=your-express-password
# ========================================
# PROXY CONFIGURATION (Optional)
# ========================================
# Use these only if your server must access the internet through a corporate proxy.
# Leave all three empty when no proxy is required.
OVIS_HTTP_PROXY=
OVIS_HTTPS_PROXY=
OVIS_NO_PROXY=
# ========================================
# PREPROCESSOR OVERRIDES (Optional)
# ========================================
# These variables customize preprocessing behavior without code changes.
# See main compose.yaml for detailed documentation of each variable.
# Global / patient status
OVIS_PREPROC_DECEASED_KEYWORDS=["verstorben","dead","deceased","not alive","gestorben"]
# Rezidiv detection
OVIS_PREPROC_REZIDIV_PREFIXES=["Rezidiv"]
OVIS_PREPROC_REZIDIV_CANONICAL=Rezidiv
OVIS_PREPROC_REZIDIV_LYMPH_STATES=["Rezidiv","Neu"]
# Progress / DFS
OVIS_PREPROC_PROGRESS_LABELS=["Progression","Divergentes Geschehen","Rezidiv"]
OVIS_PREPROC_COMPLETE_REMISSION_LABELS=["Vollremission / Tumorfrei (complete remission)"]
# DFS start conditions
OVIS_PREPROC_RCLASS_SUCCESS=["R0"]
OVIS_PREPROC_LOCAL_RSTATE_SUCCESS=["R0"]
# Metastasis detection
OVIS_PREPROC_METASTASIS_PREFIXES=["Rezidiv","Neu"]
OVIS_PREPROC_METASTASIS_SPREAD_VALUES=["Neu","Rezidiv","Tumornachweis"]
OVIS_PREPROC_METASTASIS_STRAT_SYNCHRON=Synchrone Metastasierung
OVIS_PREPROC_METASTASIS_STRAT_NONE=keine synchrone Metastasierung
# Study phases to treat as null
OVIS_PREPROC_NULL_STUDY_PHASES=["NOPH","KA"]
# Therapy mappings
OVIS_PREPROC_PREV_THERAPY_SURGERY=["operation"]
OVIS_PREPROC_PREV_THERAPY_SYSTEMIC=["systemic"]
OVIS_PREPROC_PREV_THERAPY_RADIATION=["radiation"]
# Consultation mappings
OVIS_PREPROC_PREV_CONSULTATION_NUTRITION=["nutrition"]
OVIS_PREPROC_PREV_CONSULTATION_SOCIAL=["social"]
OVIS_PREPROC_PREV_CONSULTATION_PSYCHO=["psycho"]
OVIS_PREPROC_PREV_CONSULTATION_GENETIC=["genetic"]
# Tumorboard patterns (regex)
OVIS_PREPROC_TUMORBOARD_PATTERN_PRAE=prae|prä|pre
OVIS_PREPROC_TUMORBOARD_PATTERN_POST=post
OVIS_PREPROC_TUMORBOARD_PATTERN_MTB=mtb
# ECOG and distress
OVIS_PREPROC_ECOG_PREFIX=ECOG
OVIS_PREPROC_DISTRESS_TYPE=distress
OVIS_PREPROC_DISTRESS_POSITIVE_VALUES=["Positiv"]
idManagementSetup idManagementSetup
mtbaSetup mtbaSetup
obds2fhirRestSetup obds2fhirRestSetup