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https://github.com/samply/bridgehead.git
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feature: enable pscc bh within cce project
This commit is contained in:
65
cce/modules/pscc-compose.yml
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65
cce/modules/pscc-compose.yml
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@ -0,0 +1,65 @@
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version: "3.7"
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services:
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blaze-pscc:
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image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
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container_name: bridgehead-pscc-blaze
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environment:
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BASE_URL: "http://bridgehead-pscc-blaze:8080"
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JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m"
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DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
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DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP}
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CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32}
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ENFORCE_REFERENTIAL_INTEGRITY: "false"
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volumes:
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- "blaze-data-pscc:/app/data"
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labels:
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- "traefik.enable=true"
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- "traefik.http.routers.blaze_pscc.rule=PathPrefix(`/pscc-localdatamanagement`)"
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- "traefik.http.middlewares.pscc_b_strip.stripprefix.prefixes=/pscc-localdatamanagement"
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- "traefik.http.services.blaze_pscc.loadbalancer.server.port=8080"
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- "traefik.http.routers.blaze_pscc.middlewares=pscc_b_strip"
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- "traefik.http.routers.blaze_pscc.tls=true"
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focus-pscc:
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image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG}
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container_name: bridgehead-pscc-focus
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environment:
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API_KEY: ${FOCUS_BEAM_SECRET_SHORT}
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BEAM_APP_ID_LONG: focus.${PROXY_ID_PSCC}
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PROXY_ID: ${PROXY_ID_PSCC}
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BLAZE_URL: "http://bridgehead-pscc-blaze:8080/fhir/"
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BEAM_PROXY_URL: http://beam-proxy-pscc:8081
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RETRY_COUNT: ${FOCUS_RETRY_COUNT}
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EPSILON: 0.28
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ENDPOINT_TYPE: ${FOCUS_ENDPOINT_TYPE:-blaze}
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depends_on:
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- "beam-proxy"
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- "blaze"
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beam-proxy-pscc:
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image: docker.verbis.dkfz.de/cache/samply/beam-proxy:${BEAM_TAG}
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container_name: bridgehead-pscc-beam-proxy
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environment:
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BROKER_URL: ${BROKER_URL_PSCC}
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PROXY_ID: ${PROXY_ID_PSCC}
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APP_focus_KEY: ${FOCUS_BEAM_SECRET_SHORT}
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PRIVKEY_FILE: /run/secrets/proxy.pem
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ALL_PROXY: http://forward_proxy:3128
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TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
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ROOTCERT_FILE: /conf/root.crt.pem
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secrets:
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- proxy.pem
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depends_on:
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- "forward_proxy"
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volumes:
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- /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
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- /srv/docker/bridgehead/pscc/root.crt.pem:/conf/root.crt.pem:ro
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volumes:
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blaze-data-pscc:
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secrets:
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proxy.pem:
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file: /etc/bridgehead/pki/${SITE_ID}.priv.pem
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5
cce/modules/pscc-setup.sh
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5
cce/modules/pscc-setup.sh
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#!/bin/bash
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if [ -n "$ENABLE_PSCC" ];then
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OVERRIDE+=" -f ./$PROJECT/modules/pscc-compose.yml"
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fi
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3
cce/vars
3
cce/vars
@ -1,6 +1,9 @@
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BROKER_ID=test-no-real-data.broker.samply.de
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BROKER_ID=test-no-real-data.broker.samply.de
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BROKER_ID_PSCC=test-no-real-data.broker.samply.de
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BROKER_URL=https://${BROKER_ID}
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BROKER_URL=https://${BROKER_ID}
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BROKER_URL_PSCC=https://${BROKER_ID}
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PROXY_ID=${SITE_ID}.${BROKER_ID}
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PROXY_ID=${SITE_ID}.${BROKER_ID}
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PROXY_ID_PSCC=${SITE_ID}.${BROKER_ID_PSCC}
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FOCUS_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
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FOCUS_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
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FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
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FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
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SUPPORT_EMAIL=manoj.waikar@dkfz-heidelberg.de
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SUPPORT_EMAIL=manoj.waikar@dkfz-heidelberg.de
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