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Adding more detail to EHDS2-specific installation tasks

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DavidCroftDKFZ
2024-07-10 14:18:03 +02:00
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README.md
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@@ -171,19 +171,25 @@ sudo git clone https://github.com/samply/bridgehead.git /srv/docker/bridgehead
If this is an ECDC/EHDS2 installation, switch to the ```ehds2``` branch and copy the configuration file to the required location: If this is an ECDC/EHDS2 installation, switch to the ```ehds2``` branch and copy the configuration file to the required location:
```shell ```shell
cd sudo mkdir -p /srv/docker/ecdc/data
cd /srv/docker
git clone https://github.com/samply/transFAIR.git git clone https://github.com/samply/transFAIR.git
cd transFAIR cd /srv/docker/transFAIR
sudo git checkout ehds2
docker build -t samply/transfair --no-cache . docker build -t samply/transfair --no-cache .
cd /srv/docker
git clone https://github.com/samply/focus.git
cd /srv/docker/focus
sudo git checkout ehds2
docker build -t samply/focus --no-cache .
cd /srv/docker/bridgehead cd /srv/docker/bridgehead
sudo git checkout ehds2 sudo git checkout ehds2
sudo mkdir test data
sudo mkdir -p /etc/bridgehead/ sudo mkdir -p /etc/bridgehead/
sudo cp bbmri/modules/bbmri.conf /etc/bridgehead/ sudo cp bbmri/modules/bbmri.conf /etc/bridgehead/
sudo vi /etc/bridgehead/bbmri.conf # Modify to include national node name and admin contact details sudo vi /etc/bridgehead/bbmri.conf # Modify to include national node name and admin contact details
``` ```
For an ECDC/EHDS2 installation, you will also need to copy your data in a comma-separated value (CSV) formatted file to ```/srv/docker/bridgehead/data```. Make sure it is readable by all. Only files with the ending ```.csv``` will be read in, all other files will be ignored. For an ECDC/EHDS2 installation, you will also need to copy your data in a comma-separated value (CSV) formatted file to ```/srv/docker/ecdc/data```. Make sure it is readable by all. Only files with the ending ```.csv``` will be read in, all other files will be ignored.
If this is not an ECDC/EHDS2 installation, then download your site specific configuration repository: If this is not an ECDC/EHDS2 installation, then download your site specific configuration repository:
```shell ```shell