Commit Graph

1041 Commits

Author SHA1 Message Date
David Juarez 775a459e58 Adapt changes in teiler, exporter and reporter for CCP 2025-05-26 12:55:18 +02:00
David Juarez 923faaea85 Remove conf in teiler backend 2025-05-26 10:38:28 +02:00
enola DKFZ 1981eb6037 some changes after SFTPing to my machine 2025-05-26 10:38:03 +02:00
David Juarez d068b1c6df Teiler in BBMRI 2025-05-26 10:37:20 +02:00
enola DKFZ a765f6619f exporter, reporter, teiler, auth for them 2025-05-26 10:32:23 +02:00
djuarezgf 8652b7c7ea Test docker image for bbmri teiler-dashboard 2025-05-26 10:32:23 +02:00
djuarezgf b8c8db2ffc Test image 2025-05-26 10:32:23 +02:00
djuarezgf 52e0a7cd13 Added: Exporter and Teiler for BBMRI 2025-05-26 10:32:21 +02:00
Torben Brenner f3166641a0 fix for the fix of the fix 2025-05-26 10:29:35 +02:00
Torben Brenner ffaa8922ba some more adjustments 2025-05-26 10:29:35 +02:00
Torben Brenner fc0028a14d fix: add postgres tag version 2025-05-26 10:29:35 +02:00
Torben Brenner 05cc2d49ed breakmorestuff: hardcoded ccp in modules 2025-05-26 10:29:35 +02:00
Torben Brenner 53be4c09d6 fix: disable secret sync for now 2025-05-26 10:29:35 +02:00
Torben Brenner 0540957120 fix: added variables for secret sync 2025-05-26 10:29:35 +02:00
Torben Brenner 1e5dd36912 feat: enable exporter and teiler module in bbmri 2025-05-26 10:29:35 +02:00
Tim Schumacher fd013232f5 Cache public organoid dashboard SQL query (#309) 2025-05-23 15:26:59 +02:00
DavidCroftDKFZ eb52554892 docs: add faq (#288) 2025-05-22 18:10:40 +02:00
DavidCroftDKFZ 08c695e960 docs: Control import from Directory, improve README (#297) 2025-05-22 18:03:01 +02:00
DavidCroftDKFZ 1513fe1c6c Added section relating to clearing data from Blaze (#303) 2025-05-22 18:01:43 +02:00
djuarezgf af08a9fb08 chore: change some teiler variables (#307) 2025-05-20 16:24:24 +02:00
djuarezgf b95f0efbe7 fix: add own url to teiler dashboard to make it offline compatible (#305) 2025-05-20 09:39:14 +02:00
Torben Brenner 99567e2b40 fix: Ensure transfair can properly communicate with the fhir server for requests (#304) 2025-05-19 17:01:37 +02:00
Jan 96ff6043a1 feat: allow transfair to talk to services behind the proxy (#296) 2025-05-09 13:52:33 +02:00
Jan 844ce3386e chore(transfair): update transfair config (#298) 2025-05-09 11:30:26 +02:00
Martin Lablans 9782bf66b6 Code review: Move to /tmp/bridgehead/... 2025-05-08 09:18:02 +02:00
Tim Schumacher 87f0e8ad7f Use temp directory for secret sync cache 2025-05-08 09:18:02 +02:00
Jan 7365be3e7b chore(transfair): add option to disable tls verification (#295) 2025-04-17 12:01:45 +02:00
Enola Knezevic c5d08c50a4 chore: add BBMRI ERIC acceptance env (#294) 2025-04-16 15:37:55 +02:00
Jan 72ecaadba8 fix: ssh-tunnel-setup.sh (#293) 2025-04-15 11:36:20 +02:00
Jan 2ddd535794 feat: ssh tunnel (#292)
* Added ccp module for a ssh tunnel

Usage details under https://github.com/samply/ssh-tunnel

* chore: update ssh-tunnel image to harbor

* feat: ssh tunnel support diffrent port

* chore: fix indentation

* chore: move to top level modules

* docs: add ssh-tunnel docs

---------

Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de>
2025-04-14 10:45:15 +02:00
Jan 973547c322 chore(transfair): add new gw option (#291) 2025-04-11 08:37:31 +02:00
Jan 6b649c9233 feat: expose transfair via traefik (#290)
Note: Requires a bridgehead install to generate the basic auth user
2025-04-09 13:19:52 +02:00
Tim Schumacher 3144ee5214 Fix GitLab token syncing for BBMRI 2025-03-31 11:08:59 +02:00
janskiba 68804dc71b feat: add transfair setup to ccp 2025-03-26 13:11:43 +01:00
janskiba e5aebfe382 chore!: update transfair config 2025-03-26 13:11:43 +01:00
Torben Brenner 6f3aba1eaa feat: support self-signed cert on ttp (#283) 2025-03-12 15:45:55 +01:00
Jan 82ced89b33 chore: unify blaze versioning and upgrade to 0.32 (#277) 2025-03-12 12:52:00 +01:00
Martin Lablans 5d94bac0e2 Mount queries_to_cache.conf readonly (#282) 2025-03-10 16:03:05 +01:00
Tim Schumacher 83555540f5 chore: update central Secret Sync proxy ID (#280) 2025-03-10 12:08:19 +01:00
Pierre Delpy e396e00178 Fix/ccp cql cache (#279)
* fix: adapt focus caching to new cql and add focus caching for cce and itcc

---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
2025-03-07 12:20:38 +01:00
Tim Schumacher ecb29830e4 Send the origin of /etc/bridgehead repo to Secret Sync
This is to anticipate an upcoming change in Secret Sync that will allow it to support multiple GitLab servers, e.g. verbis GitLab and BBMRI GitLab.
2025-03-05 11:04:22 +01:00
Torben Brenner 98121c17e8 Make Codeowners Rule apply to all Files in Repo 2025-02-20 17:28:38 +01:00
Torben Brenner e38511e118 Add Codeowners File 2025-02-20 17:20:54 +01:00
Pierre Delpy 8334fac84d fix: use correct obds2fhir-rest image
---------

Co-authored-by: Pierre Delpy <p.delpy@dkfz-heidelberg.de>
2025-02-20 13:48:10 +01:00
Torben Brenner 8000356b57 docs: explicitly clone main branch (#269) 2025-02-07 11:21:43 +01:00
Torben Brenner 74d8e68d96 Merge pull request #258 from samply/feat/routine-connector
feat: transFAIR
2025-02-07 10:39:54 +01:00
Torben Brenner c568a56651 refactor: set transfair log to info 2025-02-07 10:30:43 +01:00
Torben Brenner 8384143387 fix: make transfair reach the internal blaze stores 2025-02-07 09:17:17 +01:00
Torben Brenner 8fe73a8123 fix: support mode without ttp 2025-02-07 09:17:07 +01:00
Torben Brenner bca63e82a9 fix: don't use return in transfairSetup
For some reason the return not only exits transfairSetup, but also the
bridgehead script
2025-02-06 15:43:37 +01:00