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bridgehead
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335 Commits

Author SHA1 Message Date
juarez e3b8a7369b Add login module documentation 2024-02-27 12:43:31 +01:00
juarez adeaf433dc Add Exporter module documentation 2024-02-27 12:43:31 +01:00
juarez 846e9c23a7 Add DataSHIELD module documentation 2024-02-27 12:43:31 +01:00
juarez bb7451d8c3 Add JAVA_OPTS to reporter and exporter 2024-02-27 12:43:31 +01:00
juarez 26165232f0 Enable Login, Teiler and Exporter 2024-02-27 12:43:31 +01:00
juarez 7ed24f667d Export and QB Curl templates 2024-02-27 12:43:31 +01:00
juarez d97ac56126 Generate exporter api key automatically 2024-02-27 12:43:31 +01:00
juarez e7f6c0b1a0 Add default language to ccp 2024-02-27 12:43:31 +01:00
juarez c4c4f743d2 Remove updater cron of teiler-core 2024-02-27 12:43:31 +01:00
juarez be9adcbfa2 Remove clean temp files configuration of exporter 2024-02-27 12:43:30 +01:00
juarez 10a362c237 Add explanation why is the volume of exporter-db currently so important for us. 2024-02-27 12:43:30 +01:00
juarez 75c86b79e8 Add Teiler Admin to Keycloak 2024-02-27 12:43:30 +01:00
juarez a6443a6857 Remove IS_DKTK_SITE 2024-02-27 12:43:30 +01:00
juarez f3745b973a User default user rstudio in rstudio 2024-02-27 12:43:30 +01:00
Martin Lablans 50d28d293f Generate DATASHIELD_CONNECT_SECRET automatically 2024-02-27 12:43:30 +01:00
Martin Lablans 44415369cc Update ccp/modules/datashield-compose.yml 2024-02-27 12:43:30 +01:00
Martin Lablans 9b8331ed28 Update ccp/modules/datashield-compose.yml 2024-02-27 12:43:30 +01:00
Martin Lablans 73d969e374 Use LDM_PASSWORD for all admin passwords 2024-02-27 12:43:30 +01:00
juarez 840096d1d5 Enable only if true 2024-02-27 12:43:29 +01:00
juarez 43c45f0628 Remove todo in rstudio 2024-02-27 12:43:29 +01:00
juarez e182e2fbe6 Remove unnecessary version of docker-compose.override files 2024-02-27 12:43:23 +01:00
juarez c8bafb2461 R-Server rock-base:6.3 2024-02-27 12:42:38 +01:00
juarez 0866cacc5a User postgres if docker.verbis.dkfz.de 2024-02-27 12:42:38 +01:00
juarez a1e76a61b8 Remove ports of beam-connect in datashield-compose.yml 2024-02-27 12:42:38 +01:00
juarez 09aa33c912 Generate passwords only if modules are enabled 2024-02-27 12:42:38 +01:00
juarez 36ac8d41c8 Add http scheme to exporter 2024-02-27 12:42:37 +01:00
janskiba c003999721 Migrate to new app key syntax 2024-02-27 12:42:37 +01:00
juarez 50360d3f41 update new broker 2024-02-27 12:42:37 +01:00
juarez 5148e3382d Add parameter LOG_FHIR_VALIDATION to exporter 2024-02-27 12:42:37 +01:00
juarez 2d7d1d73b3 Add reporter 2024-02-27 12:42:37 +01:00
janskiba 20c65336e6 Switch to `no-auth` branch of beam-connect 2024-02-27 12:42:37 +01:00
janskiba 276f886546 secrets are readonly by default 2024-02-27 12:42:37 +01:00
janskiba bc239c0b02 change to dockerhub image 2024-02-27 12:42:37 +01:00
janskiba 6438fc5f4e Change beam-connect version and load opal cert 2024-02-27 12:42:37 +01:00
janskiba f2f48869af Change cert permission and location 2024-02-27 12:42:36 +01:00
juarez e9e1ce5a65 ccp.conf in teiler-core as secret 2024-02-27 12:42:36 +01:00
juarez 687dbba383 Add opal certificate 2024-02-27 12:42:36 +01:00
juarez 5e376b17ad Remove unnecessary volumes 2024-02-27 12:42:36 +01:00
juarez 04cf5128b0 Remove mongo db 2024-02-27 12:42:36 +01:00
juarez 43ab59563c Add Opal Password in Exporter 2024-02-27 12:42:36 +01:00
Martin Lablans 996f53a164 expose beam connect ports 2024-02-27 12:42:36 +01:00
Martin Lablans b5ce188842 Fix beam connect app id 2024-02-27 12:42:36 +01:00
Martin Lablans 325ae1d574 beam connect and move beam-connect config 2024-02-27 12:42:36 +01:00
juarez 68782d1c32 Experiment 2024-02-27 12:42:35 +01:00
juarez dfde7c18ff Experiment 2024-02-27 12:42:35 +01:00
juarez 0b1e0474d7 Add DataSHIELD 2024-02-27 12:42:35 +01:00
juarez 72255e6211 Bugfix: cross origins of exporter 2024-02-27 12:42:35 +01:00
juarez 32de51eefb Merge id-management-setup with main 2024-02-27 12:42:35 +01:00
juarez 0cfe1d3617 Change salt string for exporter and login 2024-02-27 12:42:35 +01:00
juarez fe07c63f36 Adapt teiler-ui to traefik 2024-02-27 12:42:35 +01:00
juarez 3a91259a8a Add keycloak teiler app to teiler-ui 2024-02-27 12:42:35 +01:00
juarez 4bbd2a15fe Change volume names for teiler components 2024-02-27 12:42:35 +01:00
juarez 0a17bbc81f Add stripprefix to teiler-ui 2024-02-27 12:42:35 +01:00
juarez c794508880 Add stripprefix to teiler-core 2024-02-27 12:42:34 +01:00
juarez 3e0bf38018 Add forward strategy to teiler-core 2024-02-27 12:42:34 +01:00
juarez e2d109558d Add forward strategy to teiler-core 2024-02-27 12:42:34 +01:00
juarez 9299a201a6 Deactivate traffik for mtba 2024-02-27 12:42:34 +01:00
juarez c9b1975c9e Tidy teiler and mtba volumes 2024-02-27 12:42:34 +01:00
juarez 17f52a7907 Add Teiler Core 2024-02-27 12:42:34 +01:00
juarez 4d1a9bb701 Add Endpoint for Teiler 2024-02-27 12:42:34 +01:00
juarez efc04cea4f Update Teiler Core config 2024-02-27 12:42:34 +01:00
juarez 8fe03a6cd2 Add original Keycloak config 2024-02-27 12:42:34 +01:00
p.delpy@dkfz-heidelberg.de c66dac9881 update keykloak config 2024-02-27 12:42:33 +01:00
p.delpy@dkfz-heidelberg.de 38c7f3c24a beautiful config 2024-02-27 12:42:33 +01:00
juarez 49be101165 Rename teiler to exporter (bugfix) 2024-02-27 12:42:33 +01:00
juarez 6626f860a2 Rename teiler to exporter 2024-02-27 12:42:33 +01:00
juarez eb17d8c159 Configure login extern URLs 2024-02-27 12:42:33 +01:00
juarez 6340acdbe8 Bugfix: services in teiler-ui-compose.yml 2024-02-27 12:42:32 +01:00
juarez c916a357dc Change images of dktk-teiler and dktk-keycloak 2024-02-27 12:42:32 +01:00
juarez 20e2b2a0ed Add nngm and exliquid modules 2024-02-27 12:42:32 +01:00
juarez 2e6edb6179 Add Teiler UI and Teiler module 2024-02-27 12:42:32 +01:00
Tobias Kussel c58096aa27
Merge pull request #155 from samply/fix/dnpm-no-proxy 
Add DNPM_NO_PROXY configuration option
 2024-02-23 11:37:47 +01:00
Tobias Kussel 3f6e3a2bb4 mount and process trusted certs in dnpm-beam-connect 2024-02-22 15:41:11 +00:00
Tobias Kussel 9937002d06 Add DNPM_NO_PROXY configuration option 2024-02-21 15:04:00 +00:00
Tobias Kussel aac31945a3 Add dnpm echo to dnpm-compose 2024-02-19 08:50:15 +00:00
Martin Lablans 60b2bddf15
Merge pull request #146 from samply/fix/updates 
Fix image updates for image names with vars
 2024-02-14 16:37:28 +01:00
janskiba 001b84a774 Revert "Merge pull request #147 from samply/fix/set-focus-version-to-main" 
This reverts commit 6550c0cdab, reversing
changes made to 40d991d94e.
 2024-02-12 08:55:29 +00:00
Martin Lablans 44ac09b9c1 Bump postgres version to 15.6 2024-02-09 16:58:02 +01:00
Torben Brenner 2d5b6e6932
fix: set focus version to main 2024-02-08 12:30:42 +01:00
Enola Knezevic ae02526baf
Merge pull request #142 from samply/addTestInstancesForBbmri 
Tested for test GBN and ERIC BHs
 2024-01-16 13:03:12 +01:00
Martin Lablans ea51fc5910
Hotfix Pierre: Use version 1.0.0 for MTBA 2024-01-09 11:32:01 +01:00
Martin Lablans 29fb0e7099 Use focus tag depending on ENVIRONMENT 2024-01-08 15:49:46 +01:00
Tobias Kussel a80a980cea
Merge pull request #140 from samply/feature/dnpm-node 
Feature/dnpm node
 2023-12-18 10:53:39 +01:00
Tobias Kussel f66f2755d8 Change landing page path override to /landing 2023-12-15 13:32:00 +00:00
Tobias Kussel c02da838c7 Cleanup dnpm connect module 2023-12-15 09:41:11 +00:00
Tobias Kussel 459fa7f78e Add DNPM Node feature to minimal 2023-12-15 09:24:06 +00:00
Pierre Delpy 9bf1b42003
set mtba image to latest 2023-11-30 14:58:54 +01:00
juarez 2ba9645ab4 Bugfix: MTBA 1.0.0 2023-11-30 12:29:58 +01:00
Tobias Kussel 2252504d78 add bwhc node module 2023-11-03 07:33:16 +00:00
Tobias Kussel 6bf34b7732 Enable obfuscation for ccp queries 2023-11-02 07:34:56 +00:00
p.delpy@dkfz-heidelberg.de 0555786435 fix bash logic 2023-10-24 07:42:27 +02:00
p.delpy@dkfz-heidelberg.de 262b9bd62e add adt2fhir-rest service 2023-10-24 07:30:17 +02:00
Torben Brenner 850a8eb973 chore: update postgres from 15.1 to 15.4 2023-09-18 15:06:00 +02:00
Tobias Kussel 169ce2436f fix dnpm connect env, from bool to string 2023-08-28 17:21:52 +00:00
Tobias Kussel bba8a03f9f Use beam-connect:develop for DNPM 2023-08-24 12:22:43 +00:00
Patrick Skowronek fa973e2cfa fix: path in mtba setup 2023-08-16 09:37:30 +02:00
Patrick Skowronek bbda5e917f Cleanup 2023-08-16 09:35:36 +02:00
Torben Brenner e69c0ec306 Merge branch 'main' into dktk-migration 2023-08-16 09:14:04 +02:00
Pierre Delpy 829102f23e
Merge branch 'main' into feature/custom-basic-auth 2023-08-15 14:24:19 +02:00
p.delpy@dkfz-heidelberg.de dc0fc286b1 add generic bash function addBasicAuthUser 2023-08-08 09:28:59 +02:00
Martin Lablans 54d83736c3 Move BBMRI-ERIC, GBN to modules 2023-08-07 15:19:41 +02:00
p.delpy@dkfz-heidelberg.de 788e4ea9f7 add generic bash function addBasicAuthUser 2023-07-27 13:53:20 +02:00
Martin Lablans 6ad91edefb
Don't run Blaze in debug mode 2023-07-27 09:37:19 +02:00
Torben Brenner 0a12720e4c fix: ensure id-management redirects with ssl 2023-07-25 13:27:21 +02:00
Patrick Skowronek 11db7e2be9 Remove ref to report-hub 2023-06-30 13:36:42 +02:00
Patrick Skowronek 3dec0a7178 Remove EXLIQUID 2023-06-30 13:31:11 +02:00
Patrick Skowronek 9ca3e0059e Rmoved generated of report-hub secret 2023-06-30 12:33:34 +02:00
Patrick Skowronek 512f335da8 Removed Report-Hub env var 2023-06-30 12:32:25 +02:00
Patrick Skowronek f510275685 Deleted EXLIQUID setup + compose 2023-06-30 12:30:19 +02:00
Tobias Kussel 6288f809fb Merge branch 'main' into dktk-migration 2023-06-30 09:02:37 +00:00
Tobias Kussel dd0c28daf3 Add new dktk root cert 2023-06-30 07:50:18 +00:00
Tobias Kussel 6d94ebd4eb Add path stripper 2023-06-30 06:02:32 +00:00
Tobias Kussel a033386464 Absolute path for beam root cert 2023-06-28 15:38:05 +02:00
Tobias Kussel 9f4523cf9e Absolute path for beam root cert 2023-06-28 14:55:35 +02:00
Tobias Kussel 7b32eed493 Merge branch 'main' into dktk-migration 2023-06-28 13:58:18 +02:00
Tobias Kussel f0d423fcf7 Adapt to new beam app syntax 2023-06-28 11:48:47 +02:00
Tobias Kussel 3304d2818d Merge branch 'main' into feature/dnpm-connect 2023-06-28 11:45:45 +02:00
Tobias Kussel 499360712b
Merge pull request #83 from samply/update/blaze-20 
Change blaze tag to latest
 2023-06-28 11:43:57 +02:00
Tobias Kussel 37ed5f5cd9
Merge pull request #88 from samply/new-beam-apikey-naming 
New beam-proxy api key syntax
 2023-06-28 11:34:06 +02:00
Martin Lablans 097de41652 focus: Rename SECRET to API_KEY 2023-06-19 15:45:06 +02:00
Martin Lablans 23a500aae9 focus: Rename SECRET to API_KEY 2023-06-19 13:33:26 +02:00
Martin Lablans b1ee2fa5f4 New beam-proxy api key syntax 2023-06-19 13:25:22 +02:00
Enola 6cbf7915f0
Merge pull request #87 from samply/main 
Merge Focus als Spot replacment from main
 2023-06-19 13:21:26 +02:00
Enola Knezevic 5642141f3f CCP focus develop -> main 2023-06-19 10:32:39 +02:00
Pierre Delpy 149a550940 deactivate exliquid in freiburg 2023-06-19 07:24:39 +02:00
Enola Knezevic 9dadd3efa0 variables 2023-06-16 16:28:22 +02:00
Enola Knezevic c41ebd226d DKTK local spot -> focus 🥳 2023-06-16 16:24:48 +02:00
p.delpy@dkfz-heidelberg.de 019304862e make ID Management skippable for MTBA 2023-06-15 11:02:59 +02:00
Tobias Kussel 71fea9f098 Switch to new dktk broker url with new root cert 2023-06-13 06:16:00 +00:00
Tobias Kussel ff4fb06ad1 Address review comments 2023-05-19 11:53:03 +00:00
Tobias Kussel a18b63e190 Use cached beam-connect image for dnpm 2023-05-17 10:04:35 +00:00
Tobias Kussel f4134bcfca Remove DNPM-BwHC experiment 2023-05-17 09:26:55 +00:00
Tobias Kussel 4e7f023b8a Clean up bwhc startup 2023-05-16 10:56:28 +00:00
Patrick Skowronek 2de6504832 Change blaze tag to latest 2023-05-16 11:57:27 +02:00
Tobias Kussel 187945b27e Merge remote-tracking branch 'origin/main' into feature/dnpm-connect 2023-05-16 09:25:08 +00:00
Tobias Kussel c9806ad874 Adapt DNPM configuration 2023-05-15 13:43:01 +02:00
Tobias Kussel 498092d36a Replace deprecated openssl command 2023-05-10 10:59:13 +00:00
Tobias Kussel 3e1659a38d Modularize DNPM components 2023-05-10 10:54:05 +00:00
p.delpy@dkfz-heidelberg.de dd0d2c64fd nngm migration from connector to nngm-rest 2023-05-09 07:55:30 +02:00
Tobias Kussel 503f39820b Merge branch 'main' into dnpmconnector 2023-04-04 13:02:49 +02:00
Martin Lablans 33b50372c6 Pull docker images from DKFZ mirror 2023-03-09 11:16:34 +01:00
Patrick Skowronek fdda14c1be Fixed naming of site in exliquid script 2023-02-23 14:26:59 +01:00
Martin Lablans 90773ea92a Switch beam images to develop tag 2023-02-21 09:26:53 +01:00
Pierre Delpy e4ac27061a
Merge pull request #57 from samply/feature/idManagementModule 
Added Module for Id-Management
 2023-02-09 10:22:30 +01:00
Torben Brenner 5a7dd1d0ae fix: Use Mapped Site Id in Patientlist 2023-02-09 10:07:05 +01:00
Torben Brenner 64095ac8dd feat: Added Upload ApiKey to Patientlist 2023-02-09 09:15:29 +01:00
Torben Brenner d728ccd886 refactor: Fixated Postgres Version to 15.1 
All Minor Updates will cause a crashing postgres on start
 2023-02-08 15:02:35 +01:00
Torben Brenner c88919c926 feature: Ensured the mapping to legacy ids works 2023-02-08 14:42:52 +01:00
p.delpy@dkfz-heidelberg.de e9455a5558 update mtba config 2023-02-07 16:39:43 +01:00
p.delpy@dkfz-heidelberg.de bce28342f9 update docker and host paths 2023-02-07 16:33:29 +01:00