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bridgehead
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195 Commits

Author SHA1 Message Date
Bridgehead User 2e8b1dc96c Deal with multiple data files 
The original TransFAIR logic was only able to handle a single CSV file
and broke if there were more. This commit fixes that.
 2024-07-12 08:45:17 +02:00
Gerhard Salvini 17f372b06c Implement a gentler way of handling clock skew 2024-07-10 14:02:04 +02:00
Gerhard Salvini e309dc495a Improved docker-compose for transFAIR 
In particular, corrected the code for detecting CSV files in the data directory.
The old code could not handle more than one CSV file.
 2024-06-18 15:28:37 +02:00
Gerhard Salvini 1b82207934 Migrated TransFAIR start logic from launch file to docker-compose 
The start-up logic for TransFAIR is specific to the ECDC/EHDS2 Bridgehead,
and did not belong in the TransFAIR repo. This commit fixes that.

It also honours the change of the TransFAIR branch name for this
project, "ehds2".
 2024-03-26 17:00:42 +01:00
Gerhard Salvini b9b44d2530 Using standardized conditions for starting transfair 2024-03-19 09:07:56 +01:00
Gerhard Salvini 0d1f425df0 Auto-build focus and transfair 
This auto-build functionality is a workaround for a bug, described in README.

The README now has additional documentation for EHDS2.

The root certificate files have been expanded to contain certificates for
both the ECDC and the DKFZ setup.
 2024-03-18 11:03:50 +01:00
Tobias Kussel d16eb6c94d git requires http proxy config even vor https connections 2023-10-25 08:47:02 +00:00
Patrick Skowronek 699d8d6398 fix: git call 2023-10-24 10:42:36 +02:00
lablans 392afb6410 Fix code 2023-10-24 07:23:24 +00:00
lablans f855a19865 Fix sed (?) 2023-10-24 07:12:18 +00:00
lablans bbfc607104 Always define new vars 2023-10-24 07:07:06 +00:00
lablans f008b18760 Redo proxy, set HTTPS_PROXY_HOST and HTTPS_PROXY_PORT 2023-10-24 07:01:22 +00:00
Tobias Kussel e0990d99cb Comment out HTTP proxy parsing 2023-10-23 11:06:59 +00:00
Martin Lablans 9fc8564e4e Fixed git proxy check 2023-10-20 16:47:15 +02:00
Martin Lablans 74817a21da Rewrote proxy detection logic to deal with all combinations of no/authenticated/unauthenticated proxy servers 2023-10-20 15:59:24 +02:00
Patrick Skowronek 68cd62b981 reaf: var naming for proxy usage in our bridgehead scripts 2023-10-10 10:43:22 +02:00
Patrick Skowronek 85446b0a3e Added SECURE_PROXY if the https and http proxy are the same 2023-10-09 09:43:30 +02:00
Patrick Skowronek 4bdad68da5 Added proxy user + pw detection 2023-10-05 09:43:57 +02:00
Pierre Delpy 3c0a994237 use docker cache for beam-enroll and vaultfetcher 2023-09-27 09:22:11 +02:00
Martin Lablans b07731442b
Merge pull request #121 from samply/chown-message 
Fix error messages about wrong permissions
 2023-09-25 10:23:50 +02:00
janskiba c354c450f3 Check if curl is installed 2023-09-21 16:23:22 +00:00
Martin Lablans 2b0cdc0345 Fix error messages about wrong permissions 2023-09-19 11:33:19 +02:00
janskiba 6cfa745385 Remove -it from docker run 2023-08-17 11:21:20 +00:00
p.delpy@dkfz-heidelberg.de af25df79e3 refactor addUser to adduser - lowercase 2023-08-15 15:42:42 +02:00
p.delpy@dkfz-heidelberg.de b58348328c fix nngm migration 2023-08-15 15:34:49 +02:00
Pierre Delpy 829102f23e
Merge branch 'main' into feature/custom-basic-auth 2023-08-15 14:24:19 +02:00
p.delpy@dkfz-heidelberg.de 4754eb282b add migration for old credentials 2023-08-15 14:08:22 +02:00
p.delpy@dkfz-heidelberg.de 3f43c32bd2 refactor addUser code 2023-08-09 09:10:20 +02:00
p.delpy@dkfz-heidelberg.de dc0fc286b1 add generic bash function addBasicAuthUser 2023-08-08 09:28:59 +02:00
Martin Lablans 54d83736c3 Move BBMRI-ERIC, GBN to modules 2023-08-07 15:19:41 +02:00
Martin Lablans 6ccf9b2a70
Merge pull request #64 from samply/automate 
Allow to automate installation
 2023-08-01 10:54:56 +02:00
Torben Brenner 7093166a53 fix: make the check case insensitive 2023-08-01 10:25:23 +02:00
Torben Brenner 20359fde71 fix: correctly parse curl output 2023-08-01 10:23:14 +02:00
Martin Lablans b7ed90c5c8 Change logging/reporting order 2023-07-28 11:32:52 +00:00
Martin Lablans 11bfd94f2a
Merge branch 'main' into checkClockSync 2023-07-28 13:28:18 +02:00
lablans 9facafd0c4 Only read headers from Broker to check clock skew 2023-07-28 11:23:54 +00:00
p.delpy@dkfz-heidelberg.de 788e4ea9f7 add generic bash function addBasicAuthUser 2023-07-27 13:53:20 +02:00
Tobias Kussel 3304d2818d Merge branch 'main' into feature/dnpm-connect 2023-06-28 11:45:45 +02:00
p.delpy@dkfz-heidelberg.de ee727fb220 add max-time for curl monitoring 2023-05-16 08:56:31 +02:00
Tobias Kussel d87745443e support minimal project in system preparation 2023-05-10 20:15:14 +02:00
Tobias Kussel 3e1659a38d Modularize DNPM components 2023-05-10 10:54:05 +00:00
Torben Brenner 25081c1bf4 hotfix: Switch to old Project Name 2023-03-09 15:28:07 +01:00
Martin Lablans 33b50372c6 Pull docker images from DKFZ mirror 2023-03-09 11:16:34 +01:00
Martin Lablans 380511d3bb Don't delete docker images if BK is not running 2023-03-08 10:37:37 +01:00
lablans 0ff153ef22 Use project name. Add is-running function. 2023-03-08 09:01:05 +00:00
Tobias Kussel ea3e148fd3
Merge pull request #62 from samply/feature/develop-install 
Add developer install
 2023-02-27 14:58:40 +01:00
Tobias Kussel b0086ee4af
Merge pull request #60 from samply/feature/check-for-wsl 
During install, check if running in WSL and if systemd is present
 2023-02-27 13:16:07 +01:00
Tobias Kussel 5d38f48f68 Add developer install 2023-02-24 16:32:17 +01:00
Tobias Kussel bfc00b9967 Prevent variable splitting in wsl check and improve error message 2023-02-24 11:41:05 +01:00
Tobias Kussel 7a350a8c9b Fix string comparison in WSL check 2023-02-24 11:29:06 +01:00