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Author SHA1 Message Date
djuarezgf 3d33fd6778 feat: migrate OIDC Configuration from Keycloak to Authentik (#327) 
* Change: Authentik instead of Keycloak in CCP

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

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Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:40:50 +01:00
Jan 281a1b2cb6 feat: remove local rstudio (#322) 2026-01-28 13:40:50 +01:00
djuarezgf 4ddc906fcd CCE Teiler and Export (#323) 
* Added Exporter to CCE

* Add Teiler to CCE

* Add EXPORTER_USER to adduser function
 2026-01-28 13:40:50 +01:00
Pierre Delpy fa36558d2e fix: add obfuscation and basic auth to spot in cce and itcc (#324) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2026-01-28 13:40:50 +01:00
djuarezgf af8ad48e2c Use relative paths in teiler (#320) 2026-01-28 13:40:50 +01:00
Tobias Kussel ecd8d60e99 docs: close Exporter code block in readme (#318) 2026-01-28 13:40:50 +01:00
djuarezgf 0a5da028db fix: Create Exporter User only if Exporter is enabled (#317) 2026-01-28 13:40:50 +01:00
Enola Knezevic c45c6eb0ea chore: update eric.acc.root.crt.pem (#316) 2026-01-28 13:40:50 +01:00
djuarezgf 01173c9857 docs: add Teiler and Exporter to the main README.md (#315) 
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
 2026-01-28 13:40:50 +01:00
djuarezgf ac0c37cba3 feat: add Teiler and Exporter in BBMRI (#312) 
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:40:50 +01:00
Martin Lablans 31b6c3bee3 chore: externalize POSTGRES_TAG and bump postgres to 15.13 (#313) 2026-01-28 13:40:50 +01:00
Tim Schumacher 8ddcfc123f Cache public organoid dashboard SQL query (#309) 2026-01-28 13:40:50 +01:00
DavidCroftDKFZ 9e23059ef2 docs: add faq (#288) 2026-01-28 13:40:50 +01:00
DavidCroftDKFZ 87e4ad595f docs: Control import from Directory, improve README (#297) 2026-01-28 13:40:50 +01:00
DavidCroftDKFZ 4d7ba813e0 Added section relating to clearing data from Blaze (#303) 2026-01-28 13:40:50 +01:00
djuarezgf 84f73fc1fb chore: change some teiler variables (#307) 2026-01-28 13:40:50 +01:00
djuarezgf 7d177a0b03 fix: add own url to teiler dashboard to make it offline compatible (#305) 2026-01-28 13:40:50 +01:00
Torben Brenner 5caaad26f2 fix: Ensure transfair can properly communicate with the fhir server for requests (#304) 2026-01-28 13:40:50 +01:00
Jan b778da3f56 feat: allow transfair to talk to services behind the proxy (#296) 2026-01-28 13:40:50 +01:00
Jan f9586f27b1 chore(transfair): update transfair config (#298) 2026-01-28 13:40:50 +01:00
Martin Lablans 8846efde85 Code review: Move to /tmp/bridgehead/... 2026-01-28 13:40:50 +01:00
Tim Schumacher 46ff2e9882 Use temp directory for secret sync cache 2026-01-28 13:40:50 +01:00
Jan 50263c767d chore(transfair): add option to disable tls verification (#295) 2026-01-28 13:40:50 +01:00
Enola Knezevic 7b3327ec24 chore: add BBMRI ERIC acceptance env (#294) 2026-01-28 13:40:50 +01:00
Jan 2c9a50149b fix: ssh-tunnel-setup.sh (#293) 2026-01-28 13:40:50 +01:00
Jan e0c21625cc feat: ssh tunnel (#292) 
* Added ccp module for a ssh tunnel

Usage details under https://github.com/samply/ssh-tunnel

* chore: update ssh-tunnel image to harbor

* feat: ssh tunnel support diffrent port

* chore: fix indentation

* chore: move to top level modules

* docs: add ssh-tunnel docs

---------

Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de>
 2026-01-28 13:40:50 +01:00
Jan 5ac8042742 chore(transfair): add new gw option (#291) 2026-01-28 13:40:50 +01:00
Jan 3267dd088c feat: expose transfair via traefik (#290) 
Note: Requires a bridgehead install to generate the basic auth user
 2026-01-28 13:40:50 +01:00
Tim Schumacher 9cd5042ebc Fix GitLab token syncing for BBMRI 2026-01-28 13:40:50 +01:00
janskiba 265c7bee33 feat: add transfair setup to ccp 2026-01-28 13:40:50 +01:00
janskiba d79e74ca90 chore!: update transfair config 2026-01-28 13:40:50 +01:00
Manoj Waikar 82841a6f04 Fix airgapped-blaze-compose.yml file. 
- BASE_URL & traefik settings
 2025-03-25 15:23:16 +01:00
Manoj Waikar ba6f2c3b11 Modify container name (as it was a duplicate). 2025-03-24 09:50:06 +01:00
Manoj Waikar 39a4231c1f Add airgapped-blaze-{compose,setup} files in cce modules. 
- for testing out airgapped-blaze at VHIO
 2025-03-21 15:15:03 +01:00
Torben Brenner 6f3aba1eaa feat: support self-signed cert on ttp (#283) 2025-03-12 15:45:55 +01:00
Jan 82ced89b33 chore: unify blaze versioning and upgrade to 0.32 (#277) 2025-03-12 12:52:00 +01:00
Martin Lablans 5d94bac0e2 Mount queries_to_cache.conf readonly (#282) 2025-03-10 16:03:05 +01:00
Tim Schumacher 83555540f5 chore: update central Secret Sync proxy ID (#280) 2025-03-10 12:08:19 +01:00
Pierre Delpy e396e00178 Fix/ccp cql cache (#279) 
* fix: adapt focus caching to new cql and add focus caching for cce and itcc

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Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2025-03-07 12:20:38 +01:00
Tim Schumacher ecb29830e4 Send the origin of /etc/bridgehead repo to Secret Sync 
This is to anticipate an upcoming change in Secret Sync that will allow it to support multiple GitLab servers, e.g. verbis GitLab and BBMRI GitLab.
 2025-03-05 11:04:22 +01:00
Torben Brenner 98121c17e8 Make Codeowners Rule apply to all Files in Repo 2025-02-20 17:28:38 +01:00
Torben Brenner e38511e118 Add Codeowners File 2025-02-20 17:20:54 +01:00
Pierre Delpy 8334fac84d fix: use correct obds2fhir-rest image 
---------

Co-authored-by: Pierre Delpy <p.delpy@dkfz-heidelberg.de>
 2025-02-20 13:48:10 +01:00
Torben Brenner 8000356b57 docs: explicitly clone main branch (#269) 2025-02-07 11:21:43 +01:00
Torben Brenner 74d8e68d96 Merge pull request #258 from samply/feat/routine-connector 
feat: transFAIR
 2025-02-07 10:39:54 +01:00
Torben Brenner c568a56651 refactor: set transfair log to info 2025-02-07 10:30:43 +01:00
Torben Brenner 8384143387 fix: make transfair reach the internal blaze stores 2025-02-07 09:17:17 +01:00
Torben Brenner 8fe73a8123 fix: support mode without ttp 2025-02-07 09:17:07 +01:00
Torben Brenner bca63e82a9 fix: don't use return in transfairSetup 
For some reason the return not only exits transfairSetup, but also the
bridgehead script
 2025-02-06 15:43:37 +01:00
Jan 721627a78f feat: migrate to new dnpm:dip node (#251) 
* feat: migrate to new dnpm:dip node

* hardcode dnpm connector type to broker

* use `SITE_NAME` for dnpm `LOCAL_SITE`

* host central targets in git

* dnpm: add goettingen to central targets

* dnpm: add uksh to central targets

* dnpm: replace named volumes with fs volumes

* chore: change dnpm images

* chore: pin mysql

* dnpm: Secure endpoints for ETL and p2p communications (#254)

* fix authup redirect (#262)

When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP. 

Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.

* Whitespace formatting

---------

Co-authored-by: Niklas <niklas@ytvwld.de>
Co-authored-by: Niklas Reimer <niklas@backbord.net>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2025-02-05 13:24:28 +01:00