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bridgehead
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530 Commits

Author SHA1 Message Date
Enola Knezevic 1c3785ace7 added missing variables and renamed correctly 2023-03-22 11:37:48 +01:00
Enola Knezevic 8f3d2f0947 replace local spot with focus 2023-03-22 11:26:55 +01:00
Croft 8deafe2023 Merge branch 'main' into update_readme_for_installation 2023-03-22 09:56:11 +01:00
Radovan Tomášik c39518f763
Update README.md 2023-03-17 11:25:56 +01:00
Radovan Tomášik bf3989dcbd
Update README.md 
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2023-03-17 11:17:47 +01:00
Radovan Tomášik c53fe491d9
Update README.md 
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2023-03-17 11:17:25 +01:00
Radovan Tomášik d7a983000b
Update README.md 2023-03-17 11:03:19 +01:00
Croft bedad57f41 Changes for Directory sync PR 53 
* Change docker-compose.yml to reduce the number of environment
  variables being passed to Directory sync.
* Improve documentation.
 2023-03-14 09:59:37 +01:00
Torben Brenner bf79ade029
Merge pull request #67 from samply/hotfix/switchToOldProjectName 
hotfix: Switch to old Project Name
 2023-03-09 15:54:31 +01:00
Torben Brenner 25081c1bf4 hotfix: Switch to old Project Name 2023-03-09 15:28:07 +01:00
Tobias Kussel 7743e2cf01
Merge pull request #66 from samply/use-docker-cache 
Pull docker images from DKFZ mirror
 2023-03-09 11:24:12 +01:00
Martin Lablans 33b50372c6 Pull docker images from DKFZ mirror 2023-03-09 11:16:34 +01:00
Martin Lablans dd4066d1a0
Merge pull request #65 from samply/dont-delete-all-docker-images 
Dont delete all docker images
 2023-03-08 12:47:05 +01:00
Martin Lablans 380511d3bb Don't delete docker images if BK is not running 2023-03-08 10:37:37 +01:00
lablans 0ff153ef22 Use project name. Add is-running function. 2023-03-08 09:01:05 +00:00
Tobias Kussel ea3e148fd3
Merge pull request #62 from samply/feature/develop-install 
Add developer install
 2023-02-27 14:58:40 +01:00
Tobias Kussel b0086ee4af
Merge pull request #60 from samply/feature/check-for-wsl 
During install, check if running in WSL and if systemd is present
 2023-02-27 13:16:07 +01:00
Tobias Kussel cedc97477f Add developer install option to the documentation 2023-02-27 13:02:59 +01:00
Tobias Kussel 5d38f48f68 Add developer install 2023-02-24 16:32:17 +01:00
Tobias Kussel bfc00b9967 Prevent variable splitting in wsl check and improve error message 2023-02-24 11:41:05 +01:00
Tobias Kussel 7a350a8c9b Fix string comparison in WSL check 2023-02-24 11:29:06 +01:00
patrickskowronekdkfz a036d0a88c
Merge pull request #61 from samply/develop 
Merge develop into main
 2023-02-24 08:35:59 +01:00
Martin Lablans 857e351b88 Support gitmirror for github.com repo 2023-02-23 18:05:53 +01:00
Martin Lablans 8b2e99200e Fix typo 2023-02-23 18:05:34 +01:00
Patrick Skowronek 2dc36433bf Fixed naming of site in exliquid script 2023-02-23 18:05:19 +01:00
Martin Lablans 3023b82bb1 Switch beam images to develop tag 2023-02-23 18:05:19 +01:00
Patrick Skowronek fdda14c1be Fixed naming of site in exliquid script 2023-02-23 14:26:59 +01:00
Tobias Kussel 4578c77d4b Fix systemd check 2023-02-22 15:42:52 +01:00
Tobias Kussel 191e986364 Add check for installation in WSL and for systemd 2023-02-22 15:32:21 +01:00
lablans a23f1ae075 Automate installation 2023-02-22 12:06:28 +00:00
Martin Lablans 5fdeaa7ca4
Merge pull request #59 from samply/switch-images-to-develop 
Use beam-proxy:develop
 2023-02-21 11:45:26 +01:00
Martin Lablans 90773ea92a Switch beam images to develop tag 2023-02-21 09:26:53 +01:00
Croft 8dd1b01842 Updates for PR52 
* Incorporated some of Martin's suggestions (the ones where I had no questions)
* Updated the table of contents to reflect the current structure of the document.
 2023-02-20 16:17:45 +01:00
Pierre Delpy e4ac27061a
Merge pull request #57 from samply/feature/idManagementModule 
Added Module for Id-Management
 2023-02-09 10:22:30 +01:00
Torben Brenner 5a7dd1d0ae fix: Use Mapped Site Id in Patientlist 2023-02-09 10:07:05 +01:00
Torben Brenner a6975e37ac fix: Added Image Updates for activated Modules 2023-02-09 09:58:51 +01:00
Torben Brenner a1cd5a206e fix: Repaired check for Auto Updates 2023-02-09 09:50:30 +01:00
Torben Brenner 64095ac8dd feat: Added Upload ApiKey to Patientlist 2023-02-09 09:15:29 +01:00
Torben Brenner d728ccd886 refactor: Fixated Postgres Version to 15.1 
All Minor Updates will cause a crashing postgres on start
 2023-02-08 15:02:35 +01:00
Torben Brenner c88919c926 feature: Ensured the mapping to legacy ids works 2023-02-08 14:42:52 +01:00
Torben Brenner cdf9c359f0
Merge pull request #56 from samply/feature/idManagementModule_Rebase 
Updated MTBA Module
 2023-02-08 14:04:43 +01:00
Croft 068125c062 Updated environemnt variable names so that they start with "DS_" 2023-02-08 11:03:35 +01:00
p.delpy@dkfz-heidelberg.de e9455a5558 update mtba config 2023-02-07 16:39:43 +01:00
p.delpy@dkfz-heidelberg.de bce28342f9 update docker and host paths 2023-02-07 16:33:29 +01:00
Torben Brenner e2d90447f7 refactor: Changed Trigger of the IDM Module 2023-02-07 16:31:58 +01:00
Torben Brenner a3ba98a2fd Added Configuration for Local ID-Management 2023-02-07 16:31:58 +01:00
Torben Brenner 73b1993628
Merge pull request #51 from samply/refactor/directoryNames 
refactor: Changed Paths for persistent Data
 2023-02-07 16:27:50 +01:00
Torben Brenner 2445a59785 refacotr: Restructured passing Patientlist Seeds 2023-02-07 16:26:07 +01:00
Torben Brenner 98afeac701 refactor: Use -db as Indicator for Backups 2023-02-07 16:23:49 +01:00
Torben Brenner a37bf79c03 refactor: Added Monitoring for backup permissions 2023-02-07 16:23:49 +01:00