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bridgehead
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317 Commits

Author SHA1 Message Date
juarez 9eaaeb5064 Update export template script: FHIR_QUERY to FHIR_PATH 2024-02-13 15:12:43 +01:00
juarez c9b19a9368 /var/cache for mtba 2024-02-13 15:12:43 +01:00
juarez b0b599c96b Add docu about login in teiler 2024-02-13 15:12:43 +01:00
juarez b7c6b15425 Bugfix: datashield local.json as array 2024-02-13 15:12:43 +01:00
Martin Lablans 8e181a85c2 Prevent anonymous volume creation 2024-02-13 15:12:42 +01:00
juarez b9dbfd4803 Bugfix: Exporter and Reporter /var/cache volumes 2024-02-13 15:12:42 +01:00
juarez 3389145c1d Postgres 15.4 in datashield, exporter and login 2024-02-13 15:12:42 +01:00
djuarezgf 7d8b83b10c Update ccp/modules/mtba.md 
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2024-02-13 15:12:42 +01:00
janskiba 4a4a1d76a7 Make sure copy works and the correct owner is set 2024-02-13 15:12:42 +01:00
janskiba 785dff29bf Add all sites 2024-02-13 15:12:42 +01:00
janskiba 1f9733aa4d Auto generate mappings 2024-02-13 15:12:42 +01:00
juarez c5578f81ee Add ccp to /var/cache/bridgehead/* volumes 2024-02-13 15:12:42 +01:00
lablans fa5459c4dd Rewrite comments 2024-02-13 15:12:42 +01:00
lablans 31320a856c Move exporter db to /var/cache/bridgehead 2024-02-13 15:12:42 +01:00
lablans a340b959c2 Exporter cache 2024-02-13 15:12:42 +01:00
lablans c7d0bcf94d Rework commented sections 2024-02-13 15:12:42 +01:00
lablans 51ca9efe11 Autogenerate maps for Opal's beam-connect. To be completed by @Threated with a map-generator in the script. 2024-02-13 15:12:42 +01:00
lablans 1ef6142306 Cache opal in /var/cache/bridgehead 2024-02-13 15:12:42 +01:00
juarez e71495c70f Bugfix: Add version in every docker compose file 2024-02-13 15:12:42 +01:00
juarez e6b7a63ef7 #!/bin/bash -e 2024-02-13 15:12:42 +01:00
juarez 86ca652e8d Bugfix: LDM_AUTH instead of LDM_PASSWORD 2024-02-13 15:12:42 +01:00
juarez d1a0153a6e Rename Teiler Backend, Teiler Dashboard and Teiler Orchestrator 2024-02-13 15:12:42 +01:00
juarez 5b88df4912 Add site to exporter and reporter 2024-02-13 15:12:41 +01:00
juarez 8345a9b1f1 Add forward proxy to teiler-core 2024-02-13 15:12:41 +01:00
juarez 3d210ea303 Bugfix: mtba labels 2024-02-13 15:12:41 +01:00
juarez d8451c0426 Bugfix: exporter 2024-02-13 15:12:41 +01:00
juarez b63eb141f6 Disable datashield 2024-02-13 15:12:41 +01:00
juarez f24dfa43ef Bugfix: MTBA path prefix 2024-02-13 15:12:41 +01:00
juarez b6e03f3a78 Enable datashield 2024-02-13 15:12:41 +01:00
juarez 8d1a7e7374 Comment Keycloak volume 2024-02-13 15:12:41 +01:00
juarez 4b705be264 Fix comment in login-compose.yml 2024-02-13 15:12:41 +01:00
juarez 3e79598533 Remove old comment of exporter-setup.sh 2024-02-13 15:12:41 +01:00
juarez 6a97630bf1 Comment on datashield volume 2024-02-13 15:12:41 +01:00
juarez 3fdda8b8d4 Comment on export and report volumes 2024-02-13 15:12:41 +01:00
juarez de0193b99b Bugfix: JAVA_OPTS for exporter 2024-02-13 15:12:41 +01:00
juarez 08c9e6c822 Add mtba module documentation 2024-02-13 15:12:41 +01:00
juarez 61bfd661eb Add teiler-ui module documentation 2024-02-13 15:12:41 +01:00
janskiba 9e0c7fb5ca Add some docs about beam-connect 2024-02-13 15:12:41 +01:00
juarez ce5f94881f Add login module documentation 2024-02-13 15:12:41 +01:00
juarez cb332142c3 Add Exporter module documentation 2024-02-13 15:12:41 +01:00
juarez 0cad79575b Add DataSHIELD module documentation 2024-02-13 15:12:41 +01:00
juarez 5f77168f65 Add JAVA_OPTS to reporter and exporter 2024-02-13 15:12:41 +01:00
juarez 361950ba7f Enable Login, Teiler and Exporter 2024-02-13 15:12:41 +01:00
juarez cb659b87f1 Export and QB Curl templates 2024-02-13 15:12:40 +01:00
juarez 0801ebe5a5 Generate exporter api key automatically 2024-02-13 15:12:40 +01:00
juarez ceb089ddd7 Add default language to ccp 2024-02-13 15:12:40 +01:00
juarez f71832dd65 Remove updater cron of teiler-core 2024-02-13 15:12:40 +01:00
juarez 17036d459e Remove clean temp files configuration of exporter 2024-02-13 15:12:40 +01:00
juarez 146417f103 Add explanation why is the volume of exporter-db currently so important for us. 2024-02-13 15:12:40 +01:00
juarez 0cd0dc555b Add Teiler Admin to Keycloak 2024-02-13 15:12:40 +01:00
juarez d3ecef5f04 Remove IS_DKTK_SITE 2024-02-13 15:12:40 +01:00
juarez 0caf98224f User default user rstudio in rstudio 2024-02-13 15:12:40 +01:00
Martin Lablans 412419494c Generate DATASHIELD_CONNECT_SECRET automatically 2024-02-13 15:12:40 +01:00
Martin Lablans 2f7797b1f1 Update ccp/modules/datashield-compose.yml 2024-02-13 15:12:40 +01:00
Martin Lablans dcd31bfd7c Update ccp/modules/datashield-compose.yml 2024-02-13 15:12:40 +01:00
Martin Lablans 90afe71b1b Use LDM_PASSWORD for all admin passwords 2024-02-13 15:12:40 +01:00
juarez d5924e64a3 Enable only if true 2024-02-13 15:12:40 +01:00
juarez dfa12ca686 Remove todo in rstudio 2024-02-13 15:12:40 +01:00
juarez 213ac6370a Remove unnecessary version of docker-compose.override files 2024-02-13 15:12:40 +01:00
juarez 9732ef33b7 R-Server rock-base:6.3 2024-02-13 15:12:40 +01:00
juarez dc6e0a349f User postgres if docker.verbis.dkfz.de 2024-02-13 15:12:40 +01:00
juarez cb909dbcd4 Remove ports of beam-connect in datashield-compose.yml 2024-02-13 15:12:40 +01:00
juarez 69f1748ae7 Generate passwords only if modules are enabled 2024-02-13 15:12:40 +01:00
juarez 0cbbee6906 Add http scheme to exporter 2024-02-13 15:12:39 +01:00
janskiba 7170612376 Migrate to new app key syntax 2024-02-13 15:12:39 +01:00
juarez 44134550ac update new broker 2024-02-13 15:12:39 +01:00
juarez 4ba5144140 Add parameter LOG_FHIR_VALIDATION to exporter 2024-02-13 15:12:39 +01:00
juarez 0d07a09296 Add reporter 2024-02-13 15:12:39 +01:00
janskiba 5b62a1a248 Switch to `no-auth` branch of beam-connect 2024-02-13 15:12:39 +01:00
janskiba bdf943f94e secrets are readonly by default 2024-02-13 15:12:39 +01:00
janskiba bc476ed0a8 change to dockerhub image 2024-02-13 15:12:39 +01:00
janskiba f351cc931c Change beam-connect version and load opal cert 2024-02-13 15:12:39 +01:00
janskiba 9dd3c24a6d Change cert permission and location 2024-02-13 15:12:39 +01:00
juarez b4581e8b3a ccp.conf in teiler-core as secret 2024-02-13 15:12:39 +01:00
juarez da49437ada Add opal certificate 2024-02-13 15:12:39 +01:00
juarez 1f4c2cad03 Remove unnecessary volumes 2024-02-13 15:12:39 +01:00
juarez cae40aa39a Remove mongo db 2024-02-13 15:12:39 +01:00
juarez 8679d46b62 Add Opal Password in Exporter 2024-02-13 15:12:39 +01:00
Martin Lablans 1438c32455 expose beam connect ports 2024-02-13 15:12:39 +01:00
Martin Lablans bfd33c0c1b Fix beam connect app id 2024-02-13 15:12:39 +01:00
Martin Lablans 0230303bd5 beam connect and move beam-connect config 2024-02-13 15:12:39 +01:00
juarez a86e594e85 Experiment 2024-02-13 15:12:39 +01:00
juarez 75f9b73e98 Experiment 2024-02-13 15:12:38 +01:00
juarez 90e2f2e40b Add DataSHIELD 2024-02-13 15:12:38 +01:00
juarez b0da23ac1c Bugfix: cross origins of exporter 2024-02-13 15:12:38 +01:00
juarez c836a7554f Merge id-management-setup with main 2024-02-13 15:12:38 +01:00
juarez fdd26083b6 Change salt string for exporter and login 2024-02-13 15:12:38 +01:00
juarez 3dcf83e4e8 Adapt teiler-ui to traefik 2024-02-13 15:12:38 +01:00
juarez a13b851edd Add keycloak teiler app to teiler-ui 2024-02-13 15:12:38 +01:00
juarez a2e9a86bc0 Change volume names for teiler components 2024-02-13 15:12:38 +01:00
juarez 1bb6df65fe Add stripprefix to teiler-ui 2024-02-13 15:12:38 +01:00
juarez 8e591773f4 Add stripprefix to teiler-core 2024-02-13 15:12:38 +01:00
juarez d915debbbb Add forward strategy to teiler-core 2024-02-13 15:12:38 +01:00
juarez 2c7bdfd868 Add forward strategy to teiler-core 2024-02-13 15:12:38 +01:00
juarez cf255bf08b Deactivate traffik for mtba 2024-02-13 15:12:38 +01:00
juarez 813a698dbb Tidy teiler and mtba volumes 2024-02-13 15:12:38 +01:00
juarez 30090f3633 Add Teiler Core 2024-02-13 15:12:38 +01:00
juarez 52f311ba1c Add Endpoint for Teiler 2024-02-13 15:12:38 +01:00
juarez f32d124fda Update Teiler Core config 2024-02-13 15:12:38 +01:00
juarez 8140b6dd7b Add original Keycloak config 2024-02-13 15:12:38 +01:00