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bridgehead
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319 Commits

Author SHA1 Message Date
juarez adf2bd6e27 Remove IS_DKTK_SITE 2024-02-14 21:29:02 +01:00
juarez 799252f3fc User default user rstudio in rstudio 2024-02-14 21:29:02 +01:00
Martin Lablans 1eb6362fc5 Generate DATASHIELD_CONNECT_SECRET automatically 2024-02-14 21:29:02 +01:00
Martin Lablans 0e87f5ac34 Update ccp/modules/datashield-compose.yml 2024-02-14 21:29:02 +01:00
Martin Lablans 56fad15ba5 Update ccp/modules/datashield-compose.yml 2024-02-14 21:29:02 +01:00
Martin Lablans 1e9940f254 Use LDM_PASSWORD for all admin passwords 2024-02-14 21:29:02 +01:00
juarez d05e96c141 Enable only if true 2024-02-14 21:29:02 +01:00
juarez 6ef3bf6726 Remove todo in rstudio 2024-02-14 21:29:02 +01:00
juarez 9fa971d92c Remove unnecessary version of docker-compose.override files 2024-02-14 21:29:02 +01:00
juarez 8e51054887 R-Server rock-base:6.3 2024-02-14 21:29:02 +01:00
juarez 30cae72c42 User postgres if docker.verbis.dkfz.de 2024-02-14 21:29:02 +01:00
juarez 096caa8513 Remove ports of beam-connect in datashield-compose.yml 2024-02-14 21:29:02 +01:00
juarez c03e85cfca Generate passwords only if modules are enabled 2024-02-14 21:29:02 +01:00
juarez 5684307539 Add http scheme to exporter 2024-02-14 21:29:02 +01:00
janskiba 8cecb2cd47 Migrate to new app key syntax 2024-02-14 21:29:02 +01:00
juarez 3f0625ef2a update new broker 2024-02-14 21:29:01 +01:00
juarez 128913cc9a Add parameter LOG_FHIR_VALIDATION to exporter 2024-02-14 21:29:01 +01:00
juarez 309513e042 Add reporter 2024-02-14 21:29:01 +01:00
janskiba b3d7b806bf Switch to `no-auth` branch of beam-connect 2024-02-14 21:29:01 +01:00
janskiba 632b48bd37 secrets are readonly by default 2024-02-14 21:29:01 +01:00
janskiba bb54de1534 change to dockerhub image 2024-02-14 21:29:01 +01:00
janskiba 9bcfdec5f0 Change beam-connect version and load opal cert 2024-02-14 21:29:01 +01:00
janskiba 5a33f6aa89 Change cert permission and location 2024-02-14 21:29:01 +01:00
juarez a946b37c68 ccp.conf in teiler-core as secret 2024-02-14 21:29:01 +01:00
juarez c966395236 Add opal certificate 2024-02-14 21:29:01 +01:00
juarez e763bc3313 Remove unnecessary volumes 2024-02-14 21:29:01 +01:00
juarez 18e88f61f9 Remove mongo db 2024-02-14 21:29:01 +01:00
juarez 80739aa89b Add Opal Password in Exporter 2024-02-14 21:29:01 +01:00
Martin Lablans c5ab688ab7 expose beam connect ports 2024-02-14 21:29:01 +01:00
Martin Lablans 9bab3523b1 Fix beam connect app id 2024-02-14 21:29:01 +01:00
Martin Lablans babfff4f24 beam connect and move beam-connect config 2024-02-14 21:29:01 +01:00
juarez 8b3db20430 Experiment 2024-02-14 21:29:01 +01:00
juarez 9b1b426aff Experiment 2024-02-14 21:29:01 +01:00
juarez 1904256e6e Add DataSHIELD 2024-02-14 21:29:01 +01:00
juarez 2c4c44fbca Bugfix: cross origins of exporter 2024-02-14 21:29:01 +01:00
juarez 90b1ae619b Merge id-management-setup with main 2024-02-14 21:29:01 +01:00
juarez 29c4e77e71 Change salt string for exporter and login 2024-02-14 21:29:01 +01:00
juarez 1ceff159f1 Adapt teiler-ui to traefik 2024-02-14 21:29:00 +01:00
juarez 46412f0567 Add keycloak teiler app to teiler-ui 2024-02-14 21:29:00 +01:00
juarez c851e00af1 Change volume names for teiler components 2024-02-14 21:29:00 +01:00
juarez e89279925d Add stripprefix to teiler-ui 2024-02-14 21:29:00 +01:00
juarez 6c1e22b526 Add stripprefix to teiler-core 2024-02-14 21:29:00 +01:00
juarez 4baa81e8aa Add forward strategy to teiler-core 2024-02-14 21:29:00 +01:00
juarez 9a0c8899cf Add forward strategy to teiler-core 2024-02-14 21:29:00 +01:00
juarez 0a50d97acb Deactivate traffik for mtba 2024-02-14 21:29:00 +01:00
juarez 198b255f07 Tidy teiler and mtba volumes 2024-02-14 21:29:00 +01:00
juarez 068abbc664 Add Teiler Core 2024-02-14 21:29:00 +01:00
juarez 0564c3c18e Add Endpoint for Teiler 2024-02-14 21:29:00 +01:00
juarez 2c76c705dd Update Teiler Core config 2024-02-14 21:29:00 +01:00
juarez 05429b065d Add original Keycloak config 2024-02-14 21:29:00 +01:00
p.delpy@dkfz-heidelberg.de 29d51e33c9 update keykloak config 2024-02-14 21:29:00 +01:00
p.delpy@dkfz-heidelberg.de 6caebc2e15 beautiful config 2024-02-14 21:29:00 +01:00
juarez 9f5c30909b Rename teiler to exporter (bugfix) 2024-02-14 21:29:00 +01:00
juarez bb45a8c7bc Rename teiler to exporter 2024-02-14 21:29:00 +01:00
juarez 3d513d0f60 Configure login extern URLs 2024-02-14 21:29:00 +01:00
juarez 6496b36d99 Bugfix: services in teiler-ui-compose.yml 2024-02-14 21:29:00 +01:00
juarez 73ed709a44 Change images of dktk-teiler and dktk-keycloak 2024-02-14 21:29:00 +01:00
juarez 7405e53935 Add nngm and exliquid modules 2024-02-14 21:29:00 +01:00
juarez 3a20460275 Add Teiler UI and Teiler module 2024-02-14 21:28:59 +01:00
Martin Lablans 60b2bddf15
Merge pull request #146 from samply/fix/updates 
Fix image updates for image names with vars
 2024-02-14 16:37:28 +01:00
janskiba 001b84a774 Revert "Merge pull request #147 from samply/fix/set-focus-version-to-main" 
This reverts commit 6550c0cdab, reversing
changes made to 40d991d94e.
 2024-02-12 08:55:29 +00:00
Martin Lablans 44ac09b9c1 Bump postgres version to 15.6 2024-02-09 16:58:02 +01:00
Torben Brenner 2d5b6e6932
fix: set focus version to main 2024-02-08 12:30:42 +01:00
Enola Knezevic ae02526baf
Merge pull request #142 from samply/addTestInstancesForBbmri 
Tested for test GBN and ERIC BHs
 2024-01-16 13:03:12 +01:00
Martin Lablans ea51fc5910
Hotfix Pierre: Use version 1.0.0 for MTBA 2024-01-09 11:32:01 +01:00
Martin Lablans 29fb0e7099 Use focus tag depending on ENVIRONMENT 2024-01-08 15:49:46 +01:00
Tobias Kussel a80a980cea
Merge pull request #140 from samply/feature/dnpm-node 
Feature/dnpm node
 2023-12-18 10:53:39 +01:00
Tobias Kussel f66f2755d8 Change landing page path override to /landing 2023-12-15 13:32:00 +00:00
Tobias Kussel c02da838c7 Cleanup dnpm connect module 2023-12-15 09:41:11 +00:00
Tobias Kussel 459fa7f78e Add DNPM Node feature to minimal 2023-12-15 09:24:06 +00:00
Pierre Delpy 9bf1b42003
set mtba image to latest 2023-11-30 14:58:54 +01:00
juarez 2ba9645ab4 Bugfix: MTBA 1.0.0 2023-11-30 12:29:58 +01:00
Tobias Kussel 2252504d78 add bwhc node module 2023-11-03 07:33:16 +00:00
Tobias Kussel 6bf34b7732 Enable obfuscation for ccp queries 2023-11-02 07:34:56 +00:00
p.delpy@dkfz-heidelberg.de 0555786435 fix bash logic 2023-10-24 07:42:27 +02:00
p.delpy@dkfz-heidelberg.de 262b9bd62e add adt2fhir-rest service 2023-10-24 07:30:17 +02:00
Torben Brenner 850a8eb973 chore: update postgres from 15.1 to 15.4 2023-09-18 15:06:00 +02:00
Tobias Kussel 169ce2436f fix dnpm connect env, from bool to string 2023-08-28 17:21:52 +00:00
Tobias Kussel bba8a03f9f Use beam-connect:develop for DNPM 2023-08-24 12:22:43 +00:00
Patrick Skowronek fa973e2cfa fix: path in mtba setup 2023-08-16 09:37:30 +02:00
Patrick Skowronek bbda5e917f Cleanup 2023-08-16 09:35:36 +02:00
Torben Brenner e69c0ec306 Merge branch 'main' into dktk-migration 2023-08-16 09:14:04 +02:00
Pierre Delpy 829102f23e
Merge branch 'main' into feature/custom-basic-auth 2023-08-15 14:24:19 +02:00
p.delpy@dkfz-heidelberg.de dc0fc286b1 add generic bash function addBasicAuthUser 2023-08-08 09:28:59 +02:00
Martin Lablans 54d83736c3 Move BBMRI-ERIC, GBN to modules 2023-08-07 15:19:41 +02:00
p.delpy@dkfz-heidelberg.de 788e4ea9f7 add generic bash function addBasicAuthUser 2023-07-27 13:53:20 +02:00
Martin Lablans 6ad91edefb
Don't run Blaze in debug mode 2023-07-27 09:37:19 +02:00
Torben Brenner 0a12720e4c fix: ensure id-management redirects with ssl 2023-07-25 13:27:21 +02:00
Patrick Skowronek 11db7e2be9 Remove ref to report-hub 2023-06-30 13:36:42 +02:00
Patrick Skowronek 3dec0a7178 Remove EXLIQUID 2023-06-30 13:31:11 +02:00
Patrick Skowronek 9ca3e0059e Rmoved generated of report-hub secret 2023-06-30 12:33:34 +02:00
Patrick Skowronek 512f335da8 Removed Report-Hub env var 2023-06-30 12:32:25 +02:00
Patrick Skowronek f510275685 Deleted EXLIQUID setup + compose 2023-06-30 12:30:19 +02:00
Tobias Kussel 6288f809fb Merge branch 'main' into dktk-migration 2023-06-30 09:02:37 +00:00
Tobias Kussel dd0c28daf3 Add new dktk root cert 2023-06-30 07:50:18 +00:00
Tobias Kussel 6d94ebd4eb Add path stripper 2023-06-30 06:02:32 +00:00
Tobias Kussel a033386464 Absolute path for beam root cert 2023-06-28 15:38:05 +02:00
Tobias Kussel 9f4523cf9e Absolute path for beam root cert 2023-06-28 14:55:35 +02:00
Tobias Kussel 7b32eed493 Merge branch 'main' into dktk-migration 2023-06-28 13:58:18 +02:00
Tobias Kussel f0d423fcf7 Adapt to new beam app syntax 2023-06-28 11:48:47 +02:00
Tobias Kussel 3304d2818d Merge branch 'main' into feature/dnpm-connect 2023-06-28 11:45:45 +02:00
Tobias Kussel 499360712b
Merge pull request #83 from samply/update/blaze-20 
Change blaze tag to latest
 2023-06-28 11:43:57 +02:00
Tobias Kussel 37ed5f5cd9
Merge pull request #88 from samply/new-beam-apikey-naming 
New beam-proxy api key syntax
 2023-06-28 11:34:06 +02:00
Martin Lablans 097de41652 focus: Rename SECRET to API_KEY 2023-06-19 15:45:06 +02:00
Martin Lablans 23a500aae9 focus: Rename SECRET to API_KEY 2023-06-19 13:33:26 +02:00
Martin Lablans b1ee2fa5f4 New beam-proxy api key syntax 2023-06-19 13:25:22 +02:00
Enola 6cbf7915f0
Merge pull request #87 from samply/main 
Merge Focus als Spot replacment from main
 2023-06-19 13:21:26 +02:00
Enola Knezevic 5642141f3f CCP focus develop -> main 2023-06-19 10:32:39 +02:00
Pierre Delpy 149a550940 deactivate exliquid in freiburg 2023-06-19 07:24:39 +02:00
Enola Knezevic 9dadd3efa0 variables 2023-06-16 16:28:22 +02:00
Enola Knezevic c41ebd226d DKTK local spot -> focus 🥳 2023-06-16 16:24:48 +02:00
p.delpy@dkfz-heidelberg.de 019304862e make ID Management skippable for MTBA 2023-06-15 11:02:59 +02:00
Tobias Kussel 71fea9f098 Switch to new dktk broker url with new root cert 2023-06-13 06:16:00 +00:00
Tobias Kussel ff4fb06ad1 Address review comments 2023-05-19 11:53:03 +00:00
Tobias Kussel a18b63e190 Use cached beam-connect image for dnpm 2023-05-17 10:04:35 +00:00
Tobias Kussel f4134bcfca Remove DNPM-BwHC experiment 2023-05-17 09:26:55 +00:00
Tobias Kussel 4e7f023b8a Clean up bwhc startup 2023-05-16 10:56:28 +00:00
Patrick Skowronek 2de6504832 Change blaze tag to latest 2023-05-16 11:57:27 +02:00
Tobias Kussel 187945b27e Merge remote-tracking branch 'origin/main' into feature/dnpm-connect 2023-05-16 09:25:08 +00:00
Tobias Kussel c9806ad874 Adapt DNPM configuration 2023-05-15 13:43:01 +02:00
Tobias Kussel 498092d36a Replace deprecated openssl command 2023-05-10 10:59:13 +00:00
Tobias Kussel 3e1659a38d Modularize DNPM components 2023-05-10 10:54:05 +00:00
p.delpy@dkfz-heidelberg.de dd0d2c64fd nngm migration from connector to nngm-rest 2023-05-09 07:55:30 +02:00
Tobias Kussel 503f39820b Merge branch 'main' into dnpmconnector 2023-04-04 13:02:49 +02:00
Martin Lablans 33b50372c6 Pull docker images from DKFZ mirror 2023-03-09 11:16:34 +01:00
Patrick Skowronek fdda14c1be Fixed naming of site in exliquid script 2023-02-23 14:26:59 +01:00
Martin Lablans 90773ea92a Switch beam images to develop tag 2023-02-21 09:26:53 +01:00
Pierre Delpy e4ac27061a
Merge pull request #57 from samply/feature/idManagementModule 
Added Module for Id-Management
 2023-02-09 10:22:30 +01:00
Torben Brenner 5a7dd1d0ae fix: Use Mapped Site Id in Patientlist 2023-02-09 10:07:05 +01:00
Torben Brenner 64095ac8dd feat: Added Upload ApiKey to Patientlist 2023-02-09 09:15:29 +01:00
Torben Brenner d728ccd886 refactor: Fixated Postgres Version to 15.1 
All Minor Updates will cause a crashing postgres on start
 2023-02-08 15:02:35 +01:00
Torben Brenner c88919c926 feature: Ensured the mapping to legacy ids works 2023-02-08 14:42:52 +01:00
p.delpy@dkfz-heidelberg.de e9455a5558 update mtba config 2023-02-07 16:39:43 +01:00
p.delpy@dkfz-heidelberg.de bce28342f9 update docker and host paths 2023-02-07 16:33:29 +01:00
Torben Brenner e2d90447f7 refactor: Changed Trigger of the IDM Module 2023-02-07 16:31:58 +01:00
Torben Brenner a3ba98a2fd Added Configuration for Local ID-Management 2023-02-07 16:31:58 +01:00
Torben Brenner 2445a59785 refacotr: Restructured passing Patientlist Seeds 2023-02-07 16:26:07 +01:00
Torben Brenner 17d48a3636 refactor: Expect User to select a Backup Directory 2023-02-07 16:23:49 +01:00
Torben Brenner 1befa65f35 refactor: Changed Salt for patientlist db password 2023-02-07 16:23:18 +01:00
Torben Brenner 0d998ab871 refactor: Move persistent data to named volumes 2023-02-07 16:23:18 +01:00
Torben Brenner 1c3fa4fa3f refactor: Changed Paths for persistent Data 2023-02-07 16:22:28 +01:00
Martin Lablans 6d8e877899 Use beam-proxy "main" tag 2023-02-03 13:28:44 +01:00
Patrick Skowronek eb37d16b84 Updated Blaze to 0.19 2023-01-31 15:44:30 +01:00
Martin Lablans 4efe356005 Made it even easier for sites 2023-01-19 10:15:12 +00:00
Martin Lablans af7960e036 Improve documentation 2023-01-19 10:05:03 +00:00
p.delpy@dkfz-heidelberg.de e7b238de9d set magicpl instead of patientlist 2023-01-12 08:26:49 +01:00
p.delpy@dkfz-heidelberg.de e0c9a5ced3 Added MTBA Module 2023-01-12 08:26:49 +01:00
Torben Brenner 4d49351ad2 fix: Included Legacy ID-Mapping (Please Complete) 2023-01-12 08:26:49 +01:00
Torben Brenner 4f0526ddf4 docs: Added Documentation for the IDM Module 2023-01-12 08:26:49 +01:00
Torben Brenner 2a46bd00fd refactor: Changed Trigger of the IDM Module 2023-01-12 08:26:49 +01:00