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bridgehead
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329 Commits

Author SHA1 Message Date
juarez b4cd6b1f19 Remove unnecessary version of docker-compose.override files 2024-02-14 21:39:29 +01:00
juarez db68645c98 Bugfix: Add version in every docker compose file 2024-02-14 21:39:29 +01:00
juarez a64d3c0820 Remove unnecessary version of docker-compose.override files 2024-02-14 21:39:29 +01:00
Martin Lablans 90079601a9 Externalize postgres version 2024-02-14 21:31:27 +01:00
juarez 021056e73c MTBA 1.0.0 2024-02-14 21:29:05 +01:00
juarez 0b495b8e50 Remove nngmSetup in vars 2024-02-14 21:29:05 +01:00
Martin Lablans c96830697c Prevent creation of volumes 2024-02-14 21:29:05 +01:00
lablans ed641d324b Use Bridgehead's internal http proxy 2024-02-14 21:29:05 +01:00
Martin Lablans 79ae7c686f Make Opal use proxy server 2024-02-14 21:29:05 +01:00
janskiba 11a03ca1c7 Use newest version of `beam-connect` 2024-02-14 21:29:05 +01:00
juarez fca551c318 Update export template script: FHIR_QUERY to FHIR_PATH 2024-02-14 21:29:05 +01:00
juarez 34cd4302bd /var/cache for mtba 2024-02-14 21:29:05 +01:00
juarez e643e9f16e Add docu about login in teiler 2024-02-14 21:29:05 +01:00
juarez fdf771ffa2 Bugfix: datashield local.json as array 2024-02-14 21:29:04 +01:00
Martin Lablans 6191000588 Prevent anonymous volume creation 2024-02-14 21:29:04 +01:00
juarez 7f517fbea4 Bugfix: Exporter and Reporter /var/cache volumes 2024-02-14 21:29:04 +01:00
juarez 285f471298 Postgres 15.4 in datashield, exporter and login 2024-02-14 21:29:04 +01:00
djuarezgf 594794edb4 Update ccp/modules/mtba.md 
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2024-02-14 21:29:04 +01:00
janskiba 647630314a Make sure copy works and the correct owner is set 2024-02-14 21:29:04 +01:00
janskiba da3715d71f Add all sites 2024-02-14 21:29:04 +01:00
janskiba 895cd1f67b Auto generate mappings 2024-02-14 21:29:04 +01:00
juarez 62db3c3685 Add ccp to /var/cache/bridgehead/* volumes 2024-02-14 21:29:04 +01:00
lablans a6984f6ddd Rewrite comments 2024-02-14 21:29:04 +01:00
lablans 7ce461c763 Move exporter db to /var/cache/bridgehead 2024-02-14 21:29:04 +01:00
lablans 31fe4ca1c3 Exporter cache 2024-02-14 21:29:04 +01:00
lablans 5c910194dc Rework commented sections 2024-02-14 21:29:04 +01:00
lablans d809474ce5 Autogenerate maps for Opal's beam-connect. To be completed by @Threated with a map-generator in the script. 2024-02-14 21:29:04 +01:00
lablans 76d05a2d3b Cache opal in /var/cache/bridgehead 2024-02-14 21:29:04 +01:00
juarez 37c93737c8 Bugfix: Add version in every docker compose file 2024-02-14 21:29:04 +01:00
juarez e7486080c6 #!/bin/bash -e 2024-02-14 21:29:04 +01:00
juarez e61071103b Bugfix: LDM_AUTH instead of LDM_PASSWORD 2024-02-14 21:29:04 +01:00
juarez 88935f9f4e Rename Teiler Backend, Teiler Dashboard and Teiler Orchestrator 2024-02-14 21:29:04 +01:00
juarez 82214e3345 Add site to exporter and reporter 2024-02-14 21:29:04 +01:00
juarez 3fdd596e75 Add forward proxy to teiler-core 2024-02-14 21:29:04 +01:00
juarez 62e97375e7 Bugfix: mtba labels 2024-02-14 21:29:03 +01:00
juarez a42d4a1b8f Bugfix: exporter 2024-02-14 21:29:03 +01:00
juarez 76c7692301 Disable datashield 2024-02-14 21:29:03 +01:00
juarez ab9c55a004 Bugfix: MTBA path prefix 2024-02-14 21:29:03 +01:00
juarez 1d1c3a285b Enable datashield 2024-02-14 21:29:03 +01:00
juarez 32ffa27771 Comment Keycloak volume 2024-02-14 21:29:03 +01:00
juarez 530458f9a2 Fix comment in login-compose.yml 2024-02-14 21:29:03 +01:00
juarez e4c9df8b5e Remove old comment of exporter-setup.sh 2024-02-14 21:29:03 +01:00
juarez bc236c1154 Comment on datashield volume 2024-02-14 21:29:03 +01:00
juarez fc676dd44b Comment on export and report volumes 2024-02-14 21:29:03 +01:00
juarez 238556e3fe Bugfix: JAVA_OPTS for exporter 2024-02-14 21:29:03 +01:00
juarez e0f3809502 Add mtba module documentation 2024-02-14 21:29:03 +01:00
juarez 4bce756646 Add teiler-ui module documentation 2024-02-14 21:29:03 +01:00
janskiba 32d846494a Add some docs about beam-connect 2024-02-14 21:29:03 +01:00
juarez 78e48434da Add login module documentation 2024-02-14 21:29:03 +01:00
juarez 9e867ade89 Add Exporter module documentation 2024-02-14 21:29:03 +01:00
juarez be22977e0b Add DataSHIELD module documentation 2024-02-14 21:29:03 +01:00
juarez 75e28f4123 Add JAVA_OPTS to reporter and exporter 2024-02-14 21:29:03 +01:00
juarez 5b60908eb4 Enable Login, Teiler and Exporter 2024-02-14 21:29:03 +01:00
juarez 4f024c8ad4 Export and QB Curl templates 2024-02-14 21:29:03 +01:00
juarez e8dba5bc41 Generate exporter api key automatically 2024-02-14 21:29:03 +01:00
juarez d86c0520c7 Add default language to ccp 2024-02-14 21:29:02 +01:00
juarez ccb9f45995 Remove updater cron of teiler-core 2024-02-14 21:29:02 +01:00
juarez a14ddb805c Remove clean temp files configuration of exporter 2024-02-14 21:29:02 +01:00
juarez 3543a2b72b Add explanation why is the volume of exporter-db currently so important for us. 2024-02-14 21:29:02 +01:00
juarez 6ace352a36 Add Teiler Admin to Keycloak 2024-02-14 21:29:02 +01:00
juarez adf2bd6e27 Remove IS_DKTK_SITE 2024-02-14 21:29:02 +01:00
juarez 799252f3fc User default user rstudio in rstudio 2024-02-14 21:29:02 +01:00
Martin Lablans 1eb6362fc5 Generate DATASHIELD_CONNECT_SECRET automatically 2024-02-14 21:29:02 +01:00
Martin Lablans 0e87f5ac34 Update ccp/modules/datashield-compose.yml 2024-02-14 21:29:02 +01:00
Martin Lablans 56fad15ba5 Update ccp/modules/datashield-compose.yml 2024-02-14 21:29:02 +01:00
Martin Lablans 1e9940f254 Use LDM_PASSWORD for all admin passwords 2024-02-14 21:29:02 +01:00
juarez d05e96c141 Enable only if true 2024-02-14 21:29:02 +01:00
juarez 6ef3bf6726 Remove todo in rstudio 2024-02-14 21:29:02 +01:00
juarez 9fa971d92c Remove unnecessary version of docker-compose.override files 2024-02-14 21:29:02 +01:00
juarez 8e51054887 R-Server rock-base:6.3 2024-02-14 21:29:02 +01:00
juarez 30cae72c42 User postgres if docker.verbis.dkfz.de 2024-02-14 21:29:02 +01:00
juarez 096caa8513 Remove ports of beam-connect in datashield-compose.yml 2024-02-14 21:29:02 +01:00
juarez c03e85cfca Generate passwords only if modules are enabled 2024-02-14 21:29:02 +01:00
juarez 5684307539 Add http scheme to exporter 2024-02-14 21:29:02 +01:00
janskiba 8cecb2cd47 Migrate to new app key syntax 2024-02-14 21:29:02 +01:00
juarez 3f0625ef2a update new broker 2024-02-14 21:29:01 +01:00
juarez 128913cc9a Add parameter LOG_FHIR_VALIDATION to exporter 2024-02-14 21:29:01 +01:00
juarez 309513e042 Add reporter 2024-02-14 21:29:01 +01:00
janskiba b3d7b806bf Switch to `no-auth` branch of beam-connect 2024-02-14 21:29:01 +01:00
janskiba 632b48bd37 secrets are readonly by default 2024-02-14 21:29:01 +01:00
janskiba bb54de1534 change to dockerhub image 2024-02-14 21:29:01 +01:00
janskiba 9bcfdec5f0 Change beam-connect version and load opal cert 2024-02-14 21:29:01 +01:00
janskiba 5a33f6aa89 Change cert permission and location 2024-02-14 21:29:01 +01:00
juarez a946b37c68 ccp.conf in teiler-core as secret 2024-02-14 21:29:01 +01:00
juarez c966395236 Add opal certificate 2024-02-14 21:29:01 +01:00
juarez e763bc3313 Remove unnecessary volumes 2024-02-14 21:29:01 +01:00
juarez 18e88f61f9 Remove mongo db 2024-02-14 21:29:01 +01:00
juarez 80739aa89b Add Opal Password in Exporter 2024-02-14 21:29:01 +01:00
Martin Lablans c5ab688ab7 expose beam connect ports 2024-02-14 21:29:01 +01:00
Martin Lablans 9bab3523b1 Fix beam connect app id 2024-02-14 21:29:01 +01:00
Martin Lablans babfff4f24 beam connect and move beam-connect config 2024-02-14 21:29:01 +01:00
juarez 8b3db20430 Experiment 2024-02-14 21:29:01 +01:00
juarez 9b1b426aff Experiment 2024-02-14 21:29:01 +01:00
juarez 1904256e6e Add DataSHIELD 2024-02-14 21:29:01 +01:00
juarez 2c4c44fbca Bugfix: cross origins of exporter 2024-02-14 21:29:01 +01:00
juarez 90b1ae619b Merge id-management-setup with main 2024-02-14 21:29:01 +01:00
juarez 29c4e77e71 Change salt string for exporter and login 2024-02-14 21:29:01 +01:00
juarez 1ceff159f1 Adapt teiler-ui to traefik 2024-02-14 21:29:00 +01:00
juarez 46412f0567 Add keycloak teiler app to teiler-ui 2024-02-14 21:29:00 +01:00
juarez c851e00af1 Change volume names for teiler components 2024-02-14 21:29:00 +01:00