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bridgehead
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392 Commits

Author SHA1 Message Date
Tobias Kussel ad4430e480 Create env to control dnpm synthetic data generation 2024-02-28 10:11:03 +00:00
Jan 7245ddc720
Merge pull request #158 from samply/main 
Fix focus version
 2024-02-28 11:01:47 +01:00
Torben Brenner b2c933f5e5 fix: set focus version to 0.4.0 2024-02-28 10:52:57 +01:00
janskiba fb4da54297 chore: Add mannheim to datashield sites 2024-02-27 12:47:33 +01:00
janskiba 3e44dab9f2 chore: Remame datashield mappings to datashield sites 2024-02-27 12:47:33 +01:00
juarez f72e7c7799 Changed: replace keycloak with oidc 2024-02-27 12:47:33 +01:00
juarez 19d0fefe94 Changed: master realm 2024-02-27 12:47:33 +01:00
juarez 9a1860ccf9 Removed: / from groups 2024-02-27 12:47:33 +01:00
juarez 8a197ce5c7 Add oauth2_proxy 2024-02-27 12:47:33 +01:00
juarez 29d2bc0440 Add Keycloak to MTBA 2024-02-27 12:47:33 +01:00
juarez 2eb56e66c8 Integrate central Keycloak in Teiler 2024-02-27 12:47:33 +01:00
janskiba ef8866b943 fix: Start oauth proxy after forward_proxy is ready 2024-02-27 12:47:33 +01:00
juarez cea577bde5 Removed: login-compose 2024-02-27 12:47:33 +01:00
juarez 97a558dd46 Removed:Login-compose 2024-02-27 12:47:33 +01:00
janskiba 1995997ac2 fix: Wait for forward proxy to start 2024-02-27 12:47:33 +01:00
janskiba b241feecdb fix: Pull oauth2 proxy from harbor 2024-02-27 12:47:33 +01:00
juarez af3e5231d8 Added: Proxy to R-Studio oauth2-proxy 2024-02-27 12:47:32 +01:00
janskiba 224c1472b2 fix: Correctly set file permissions 2024-02-27 12:47:32 +01:00
janskiba 01d3a38e18 refactor: Use jq from docker 2024-02-27 12:47:32 +01:00
janskiba 92a1f4bb59 Add `dsCCPhos` 2024-02-27 12:47:32 +01:00
janskiba c60c9fc4b4 fix: Use strong pw for opal 2024-02-27 12:47:32 +01:00
janskiba f0a05b12ad fix: Generate stable passwords 2024-02-27 12:47:32 +01:00
juarez 935c45b74d Added: volume for opal metadata db (III) 2024-02-27 12:47:32 +01:00
juarez 01efc6f9b9 Added: volume for opal metadata db (II) 2024-02-27 12:47:32 +01:00
juarez e54475f704 Added: volume for opal metadata db 2024-02-27 12:47:32 +01:00
janskiba 2f04e51f96 Add test sites 2024-02-27 12:47:32 +01:00
janskiba d62f5a404b Add central token manager beam id 2024-02-27 12:47:32 +01:00
juarez 977ad139f8 Added: allowed-groups 2024-02-27 12:47:32 +01:00
juarez 643e9e67a6 Added: Enable MTBA and Enable DataSHIELD to Teiler Backend 2024-02-27 12:47:32 +01:00
juarez 37f100dc01 Default values for MTBA 2024-02-27 12:47:32 +01:00
juarez 0793ea9fc6 Use develop version of mtba 2024-02-27 12:47:32 +01:00
juarez 44d7b34834 Use last version of mtba 2024-02-27 12:47:32 +01:00
juarez f6dac7038f Only users of group DataSHIELD can use R-Studio 2024-02-27 12:47:32 +01:00
juarez 8e5ddc493c teiler-orchestrator and teiler-dashboard latest 2024-02-27 12:47:32 +01:00
janskiba d3da426610 fix: opal ssl cert 2024-02-27 12:47:31 +01:00
janskiba 1edcdce5c6 fix: beam connect site renaming 2024-02-27 12:47:31 +01:00
janskiba 9f31e950a5 fix: generate the right beam connect mappings 2024-02-27 12:47:31 +01:00
janskiba 371097377a feat: Add token-manager to beam 2024-02-27 12:47:31 +01:00
janskiba 0a2dbb4b2d fix: Restrict rstudio network access 2024-02-27 12:47:31 +01:00
juarez 148e87341f move OAUTH2_SECRET 2024-02-27 12:47:31 +01:00
juarez 28a612f218 add default template-ids of exporter and reporter 2024-02-27 12:47:31 +01:00
juarez e411883d18 mtba develop 2024-02-27 12:47:31 +01:00
juarez 0b2e64a2d5 add /oauth2/callback and /mtba to Keycloak private client 2024-02-27 12:47:31 +01:00
juarez 25ac4d2590 mtba latest 2024-02-27 12:47:31 +01:00
juarez f9b26b6958 Use develop branch for mtba 2024-02-27 12:47:27 +01:00
janskiba b44a208e08 Better redirect url handeling 2024-02-27 12:47:13 +01:00
juarez 0cd4ededc7 Add oauth2_proxy 2024-02-27 12:47:13 +01:00
juarez f6965859fe Add comment about PASSWORD and DISABLE_AUTH in R-Studio 2024-02-27 12:47:13 +01:00
juarez ae965fddb3 Add proxy to R-Studio for loading R packages 2024-02-27 12:47:13 +01:00
juarez 903ef0df9b Add Keycloak to MTBA 2024-02-27 12:47:13 +01:00
juarez e32f484c31 Add keycloak configuration 2024-02-27 12:47:13 +01:00
juarez 8486abedd4 Add R-Studio Admin Password 2024-02-27 12:47:13 +01:00
juarez 163650f592 Add generate_password function 2024-02-27 12:47:13 +01:00
juarez bb076c5d5a Add function generate_redirect_urls 2024-02-27 12:47:13 +01:00
janskiba 0015365d1b Generate addtional redirect url 2024-02-27 12:47:13 +01:00
juarez dc3d5496e1 Integrate central Keycloak in Teiler 2024-02-27 12:47:13 +01:00
juarez 3d136959e7 Bugfix: Add version in every docker compose file 2024-02-27 12:47:13 +01:00
juarez 8e171b71de Remove unnecessary version of docker-compose.override files 2024-02-27 12:47:13 +01:00
juarez d3edb5e143 Bugfix: Add version in every docker compose file 2024-02-27 12:47:13 +01:00
juarez b87d746a20 Remove unnecessary version of docker-compose.override files 2024-02-27 12:47:09 +01:00
juarez afb63306a8 Remove unnecessary version of docker-compose.override files 2024-02-27 12:46:36 +01:00
Martin Lablans 90ee8d63f7 Externalize postgres version 2024-02-27 12:44:33 +01:00
juarez 8d4f487806 MTBA 1.0.0 2024-02-27 12:44:33 +01:00
juarez a2c242583e Remove nngmSetup in vars 2024-02-27 12:44:33 +01:00
Martin Lablans 178867cde7 Prevent creation of volumes 2024-02-27 12:44:33 +01:00
lablans 77240ff92f Use Bridgehead's internal http proxy 2024-02-27 12:44:33 +01:00
Martin Lablans 876c4efa41 Make Opal use proxy server 2024-02-27 12:44:33 +01:00
janskiba 058d1c83e6 Use newest version of `beam-connect` 2024-02-27 12:44:33 +01:00
juarez ec6407414b Update export template script: FHIR_QUERY to FHIR_PATH 2024-02-27 12:44:33 +01:00
juarez 89c90d3aa0 /var/cache for mtba 2024-02-27 12:44:32 +01:00
juarez 0039efa353 Add docu about login in teiler 2024-02-27 12:44:32 +01:00
juarez c1020c569a Bugfix: datashield local.json as array 2024-02-27 12:44:32 +01:00
Martin Lablans 2237562e6e Prevent anonymous volume creation 2024-02-27 12:44:32 +01:00
juarez c8fc35576e Bugfix: Exporter and Reporter /var/cache volumes 2024-02-27 12:44:32 +01:00
juarez 3dfc4cf57d Postgres 15.4 in datashield, exporter and login 2024-02-27 12:44:32 +01:00
djuarezgf 3a6520a668 Update ccp/modules/mtba.md 
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2024-02-27 12:44:32 +01:00
janskiba e2f31b6eeb Make sure copy works and the correct owner is set 2024-02-27 12:43:34 +01:00
janskiba 452946aa04 Add all sites 2024-02-27 12:43:34 +01:00
janskiba 5c7da0d40d Auto generate mappings 2024-02-27 12:43:34 +01:00
juarez 77145277de Add ccp to /var/cache/bridgehead/* volumes 2024-02-27 12:43:34 +01:00
lablans 9cdcf2afb8 Rewrite comments 2024-02-27 12:43:34 +01:00
lablans 13a74e5dab Move exporter db to /var/cache/bridgehead 2024-02-27 12:43:34 +01:00
lablans c33726d385 Exporter cache 2024-02-27 12:43:34 +01:00
lablans f38d9f8c19 Rework commented sections 2024-02-27 12:43:34 +01:00
lablans b5ca5ea4a7 Autogenerate maps for Opal's beam-connect. To be completed by @Threated with a map-generator in the script. 2024-02-27 12:43:34 +01:00
lablans 862e452f3c Cache opal in /var/cache/bridgehead 2024-02-27 12:43:34 +01:00
juarez 4aa8f0f3ba Bugfix: Add version in every docker compose file 2024-02-27 12:43:33 +01:00
juarez ccf0b91f17 #!/bin/bash -e 2024-02-27 12:43:33 +01:00
juarez 720783249d Bugfix: LDM_AUTH instead of LDM_PASSWORD 2024-02-27 12:43:33 +01:00
juarez 2b3eabe95c Rename Teiler Backend, Teiler Dashboard and Teiler Orchestrator 2024-02-27 12:43:33 +01:00
juarez 14aece46f7 Add site to exporter and reporter 2024-02-27 12:43:33 +01:00
juarez ff1f7904ad Add forward proxy to teiler-core 2024-02-27 12:43:33 +01:00
juarez 8d38adc91e Bugfix: mtba labels 2024-02-27 12:43:33 +01:00
juarez cfc3c7c90e Bugfix: exporter 2024-02-27 12:43:33 +01:00
juarez 963144cc31 Disable datashield 2024-02-27 12:43:33 +01:00
juarez 765613b87f Bugfix: MTBA path prefix 2024-02-27 12:43:32 +01:00
juarez 2b61775652 Enable datashield 2024-02-27 12:43:32 +01:00
juarez 4b0b17424f Comment Keycloak volume 2024-02-27 12:43:32 +01:00
juarez f26a8f7a71 Fix comment in login-compose.yml 2024-02-27 12:43:32 +01:00
juarez 973b5828f6 Remove old comment of exporter-setup.sh 2024-02-27 12:43:32 +01:00