samply/bridgehead
1
0
Fork 0
mirror of https://github.com/samply/bridgehead.git synced 2026-07-17 08:20:10 +02:00
Code Issues Packages Projects Releases Wiki Activity
1,114 Commits 71 Branches 0 Tags
7b3cea5595fd94b6a4febc08997f9ca061b31c3b
Commit Graph
1114 Commits
This Branch
This Branch
All Branches
Author SHA1 Message Date
Enola KnezevicandGitHub c5d08c50a4 chore: add BBMRI ERIC acceptance env (#294) 2025-04-16 15:37:55 +02:00
JanandGitHub 72ecaadba8 fix: ssh-tunnel-setup.sh (#293) 2025-04-15 11:36:20 +02:00
JanGitHubTobias Kussel
 		2ddd535794 feat: ssh tunnel (#292) 
* Added ccp module for a ssh tunnel

Usage details under https://github.com/samply/ssh-tunnel

* chore: update ssh-tunnel image to harbor

* feat: ssh tunnel support diffrent port

* chore: fix indentation

* chore: move to top level modules

* docs: add ssh-tunnel docs

---------

Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de>
 2025-04-14 10:45:15 +02:00
JanandGitHub 973547c322 chore(transfair): add new gw option (#291) 2025-04-11 08:37:31 +02:00
JanandGitHub 6b649c9233 feat: expose transfair via traefik (#290) 
Note: Requires a bridgehead install to generate the basic auth user
 2025-04-09 13:19:52 +02:00
Tim SchumacherandTim Schumacher 3144ee5214 Fix GitLab token syncing for BBMRI 2025-03-31 11:08:59 +02:00
janskibaandTorben Brenner 68804dc71b feat: add transfair setup to ccp 2025-03-26 13:11:43 +01:00
janskibaandTorben Brenner e5aebfe382 chore!: update transfair config 2025-03-26 13:11:43 +01:00
Torben BrennerandGitHub 6f3aba1eaa feat: support self-signed cert on ttp (#283) 2025-03-12 15:45:55 +01:00
JanandGitHub 82ced89b33 chore: unify blaze versioning and upgrade to 0.32 (#277) 2025-03-12 12:52:00 +01:00
Martin LablansandGitHub 5d94bac0e2 Mount queries_to_cache.conf readonly (#282) 2025-03-10 16:03:05 +01:00
Tim SchumacherandGitHub 83555540f5 chore: update central Secret Sync proxy ID (#280) 2025-03-10 12:08:19 +01:00
Pierre DelpyGitHubp.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 		e396e00178 Fix/ccp cql cache (#279) 
* fix: adapt focus caching to new cql and add focus caching for cce and itcc

---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2025-03-07 12:20:38 +01:00
Tim SchumacherandTim Schumacher ecb29830e4 Send the origin of /etc/bridgehead repo to Secret Sync 
This is to anticipate an upcoming change in Secret Sync that will allow it to support multiple GitLab servers, e.g. verbis GitLab and BBMRI GitLab.
 2025-03-05 11:04:22 +01:00
Torben Brenner 98121c17e8 Make Codeowners Rule apply to all Files in Repo 2025-02-20 17:28:38 +01:00
Torben Brenner e38511e118 Add Codeowners File 2025-02-20 17:20:54 +01:00
Pierre DelpyGitHubPierre Delpy
 		8334fac84d fix: use correct obds2fhir-rest image 
---------

Co-authored-by: Pierre Delpy <p.delpy@dkfz-heidelberg.de>
 2025-02-20 13:48:10 +01:00
Torben BrennerandGitHub 8000356b57 docs: explicitly clone main branch (#269) 2025-02-07 11:21:43 +01:00
Torben BrennerandGitHub 74d8e68d96 Merge pull request #258 from samply/feat/routine-connector 
feat: transFAIR
 2025-02-07 10:39:54 +01:00
Torben Brenner c568a56651 refactor: set transfair log to info 2025-02-07 10:30:43 +01:00
Torben Brenner 8384143387 fix: make transfair reach the internal blaze stores 2025-02-07 09:17:17 +01:00
Torben Brenner 8fe73a8123 fix: support mode without ttp 2025-02-07 09:17:07 +01:00
Torben Brenner bca63e82a9 fix: don't use return in transfairSetup 
For some reason the return not only exits transfairSetup, but also the
bridgehead script
 2025-02-06 15:43:37 +01:00
JanGitHubNiklasNiklas ReimerMartin Lablans
 		721627a78f feat: migrate to new dnpm:dip node (#251) 
* feat: migrate to new dnpm:dip node

* hardcode dnpm connector type to broker

* use `SITE_NAME` for dnpm `LOCAL_SITE`

* host central targets in git

* dnpm: add goettingen to central targets

* dnpm: add uksh to central targets

* dnpm: replace named volumes with fs volumes

* chore: change dnpm images

* chore: pin mysql

* dnpm: Secure endpoints for ETL and p2p communications (#254)

* fix authup redirect (#262)

When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP. 

Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.

* Whitespace formatting

---------

Co-authored-by: Niklas <niklas@ytvwld.de>
Co-authored-by: Niklas Reimer <niklas@backbord.net>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2025-02-05 13:24:28 +01:00
JanandGitHub e08ff92401 Merge pull request #268 from samply/main 
Main backport
 2025-02-05 08:45:35 +01:00
JanandGitHub e3553370b6 feat: unify version handeling (#265) 2025-01-29 13:17:59 +01:00
JanandGitHub 1ad73d8f82 fix: properly load oidc secrets (#267) 2025-01-29 10:59:27 +01:00
Tobias KusselandGitHub 0b6fa439ba Merge pull request #266 from samply/fix/docker-hub-link 
Fixed Docker Hub URL list link
 2025-01-29 09:52:26 +01:00
Martin LablansGitHubTim SchumacherJanTim Schumacher
 		615990b92a Use secret-sync for gitpassword (#257) 
---------

Co-authored-by: Tim Schumacher <tim@tschumacher.net>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
Co-authored-by: Tim Schumacher <tim.schumacher@dkfz-heidelberg.de>
 2025-01-28 14:53:49 +01:00
Tobias Kussel db950d6d87 Fixed Docker Hub URL list link 2025-01-28 08:59:57 +00:00
patrickskowronekdkfzandJan 6a71da3dd1 docs: documentation for changing your configuration repository access token (#256) 2025-01-27 10:49:10 +01:00
patrickskowronekdkfzandJan 138a1fa5f1 fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME (#259) 2025-01-27 10:49:10 +01:00
patrickskowronekdkfzandJan 39a87bcf61 Update: Blaze to version 0.31 (#260) 2025-01-27 10:49:10 +01:00
Jan 655d0d24c7 fix: remove restart: always in compose files (#261) 2025-01-27 10:49:10 +01:00
janskiba fa0d9fb8b4 restrict additional blaze memory usage 2025-01-24 09:23:08 +00:00
janskiba 139fcecabe redo transfair setup 2025-01-23 13:27:42 +00:00
janskiba 2058a7a5c9 update image url 2025-01-23 12:06:43 +00:00
janskiba 47364f999e wip: routine connector 2025-01-21 13:55:08 +00:00
patrickskowronekdkfzandGitHub 910289079b docs: documentation for changing your configuration repository access token (#256) 2025-01-21 09:35:25 +01:00
patrickskowronekdkfzandGitHub 1003cd73cf fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME (#259) 2025-01-21 09:30:20 +01:00
patrickskowronekdkfzandGitHub 3d1105b97c Update: Blaze to version 0.31 (#260) 2025-01-21 09:28:47 +01:00
JanandGitHub 5c28e704d2 fix: remove restart: always in compose files (#261) 2025-01-21 09:27:27 +01:00
Tobias KusselandGitHub df1ec21848 Merge pull request #246 from samply/develop 
set environment variables needed for the focus blaze-and-sql endpoint to work when fhir2sql is enabled
 2024-12-11 10:53:27 +01:00
patrickskowronekdkfzandGitHub e3510363ad fix: remove credentials from git remote, if update fails (#253) 
Signed-off-by: Patrick Skowronek <patrick.skowronek@dkfz-heidelberg.de>
 2024-12-10 17:18:07 +01:00
Enola KnezevicandGitHub 45aefd24e5 renamed exporter API key to EXPORTER_API_KEY (#252) 2024-12-06 11:27:38 +01:00
patrickskowronekdkfzandGitHub 122ff16bb1 fix: use verbis cache image instead of docker-hub (#250) 2024-11-12 09:58:17 +01:00
djuarezgfandGitHub 967e45624e Add exporter configuration to focus (#249) 2024-11-05 15:46:00 +01:00
Tobias KusselandGitHub 8cd5b93b95 Merge pull request #237 from samply/feat/ccp-ppi 
Feat/ccp ppi
 2024-11-05 13:59:01 +01:00
JanandGitHub 52c24ee6fa fix(fhir2sql): add the postgres connection string to focus (#245) 2024-11-05 13:34:36 +01:00
davidmscholzGitHubdavidmscholzJan
 		26712d3567 feat: add and set FOCUS_ENDPOINT_TYPE to support fhir2sql (#244) 
* add and set FOCUS_ENDPOINT_TYPE

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: davidmscholz <david.scholz@dkfz-heidelberg.de>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2024-10-30 15:21:15 +01:00