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bridgehead
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779 Commits

Author SHA1 Message Date
MuhannadBaraghith c565d14ee4 Changed: 
- used image for cbioportal in cbioportal-compose to the Harbor image

- Ran tests to make sure cbioportal and cbioportal API work in Teiler backend.
 2024-02-13 15:12:46 +01:00
juarez a9c09c0d05 Added: cBioPortal 2024-02-13 15:12:46 +01:00
janskiba 2f663c45e8 Add `dsCCPhos` 2024-02-13 15:12:46 +01:00
janskiba ebbe64abee Only sync secrets on startup 2024-02-13 15:12:46 +01:00
janskiba 26c9e1286d fix: Use strong pw for opal 2024-02-13 15:12:46 +01:00
janskiba 92984d24f3 fix: Generate stable passwords 2024-02-13 15:12:46 +01:00
juarez abedfdaf64 Added: volume for opal metadata db (III) 2024-02-13 15:12:46 +01:00
juarez c751b72e0e Added: volume for opal metadata db (II) 2024-02-13 15:12:46 +01:00
juarez 65eee84a4f Added: volume for opal metadata db 2024-02-13 15:12:45 +01:00
janskiba c0f497255c Add test sites 2024-02-13 15:12:45 +01:00
janskiba 56c2955b5d Add central token manager beam id 2024-02-13 15:12:45 +01:00
juarez 0ced9b0e4e Added: allowed-groups 2024-02-13 15:12:45 +01:00
juarez bb23d6f25b Added: Enable MTBA and Enable DataSHIELD to Teiler Backend 2024-02-13 15:12:45 +01:00
juarez 8ac4e36ac1 Default values for MTBA 2024-02-13 15:12:45 +01:00
juarez 4e809f66cb Use develop version of mtba 2024-02-13 15:12:45 +01:00
juarez ca9f88421c Use last version of mtba 2024-02-13 15:12:45 +01:00
juarez 8579bc879f Only users of group DataSHIELD can use R-Studio 2024-02-13 15:12:45 +01:00
juarez 18dda72e84 teiler-orchestrator and teiler-dashboard latest 2024-02-13 15:12:45 +01:00
Jan 164d1a66fb fix: undo permission changes on startup 2024-02-13 15:12:45 +01:00
Jan ca7772421b fix: only change permissions on related files 2024-02-13 15:12:45 +01:00
janskiba 2ec44c9d48 fix: opal ssl cert 2024-02-13 15:12:45 +01:00
janskiba 9231c99141 fix: chown syntax 2024-02-13 15:12:45 +01:00
janskiba 2542c478c1 fix: beam connect site renaming 2024-02-13 15:12:45 +01:00
janskiba 7fb27efae3 fix: Change permissions on new bridgehead dirs 2024-02-13 15:12:45 +01:00
janskiba efd26aa761 fix: generate the right beam connect mappings 2024-02-13 15:12:45 +01:00
janskiba cd36ab455b feat: Add token-manager to beam 2024-02-13 15:12:45 +01:00
janskiba e9eccd5cab fix: Restrict rstudio network access 2024-02-13 15:12:45 +01:00
juarez 381633d4a0 move OAUTH2_SECRET 2024-02-13 15:12:45 +01:00
juarez 30760075a6 add default template-ids of exporter and reporter 2024-02-13 15:12:44 +01:00
juarez 1299ee2ab4 mtba develop 2024-02-13 15:12:44 +01:00
juarez fe56cbbc19 add /oauth2/callback and /mtba to Keycloak private client 2024-02-13 15:12:44 +01:00
juarez bd784e703a mtba latest 2024-02-13 15:12:44 +01:00
juarez 109426cf43 Use develop branch for mtba 2024-02-13 15:12:44 +01:00
janskiba 40d6c7cae5 fix: public client generation 2024-02-13 15:12:44 +01:00
janskiba a3c7a002fd Better redirect url handeling 2024-02-13 15:12:44 +01:00
juarez 91903fae24 Add oauth2_proxy 2024-02-13 15:12:44 +01:00
juarez ea0435bee3 Add comment about PASSWORD and DISABLE_AUTH in R-Studio 2024-02-13 15:12:44 +01:00
juarez ad1b00d16e Add proxy to R-Studio for loading R packages 2024-02-13 15:12:44 +01:00
juarez e696d3b5dd Add Keycloak to MTBA 2024-02-13 15:12:44 +01:00
juarez b683d07f48 Add keycloak configuration 2024-02-13 15:12:44 +01:00
juarez eea53cd877 Add R-Studio Admin Password 2024-02-13 15:12:44 +01:00
juarez b0ced71197 Add generate_password function 2024-02-13 15:12:44 +01:00
juarez 185143c084 Bugfix: Export /var/cache/bridgehead/secrets as environment variables 2024-02-13 15:12:44 +01:00
janskiba 0a1070c3a5 Account for ip address host values 2024-02-13 15:12:44 +01:00
janskiba 8505057863 Remove port handeling when generating redirect url 2024-02-13 15:12:44 +01:00
juarez 72d37c87f9 Add function generate_redirect_urls 2024-02-13 15:12:44 +01:00
janskiba 8aa851bfe4 Update oidc provider to new url 2024-02-13 15:12:44 +01:00
janskiba 67831ba57b Generate addtional redirect url 2024-02-13 15:12:43 +01:00
juarez 0545189cec Integrate central Keycloak in Teiler 2024-02-13 15:12:43 +01:00
Jan Skiba faf46f9fea Make sure path exists 2024-02-13 15:12:43 +01:00