Paul-Christian Volkmer
a2e7330cee
docs: Add ghcr.io to URL list ( #321 )
2025-07-25 10:58:56 +02:00
Jan
9c8d0ee8f5
fix(dnpm): fix env subsitution ( #333 )
2025-07-25 10:58:07 +02:00
djuarezgf
fcad7104f0
mtba: fallback to keycloak test server pending migration
2025-07-23 09:53:14 +02:00
djuarezgf
7e13e251f8
feat: migrate PSP to Authentik ( #329 )
2025-07-22 11:34:49 +02:00
Jan
2cfdc3ac3e
feat(dnpm): allow setting custom dnpm image tag ( #326 )
2025-07-07 15:36:14 +02:00
djuarezgf
43b24c2a62
Fixed: Authentik URL for Opal ( #328 )
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* Fixed: Authentik URL for Opal
* Removed: Unnecessary OIDC config in CCE and BBMRI
* KR with basic auth instead of OIDC
2025-07-07 15:35:54 +02:00
djuarezgf
8414604257
feat: migrate OIDC Configuration from Keycloak to Authentik ( #327 )
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* Change: Authentik instead of Keycloak in CCP
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
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Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2025-07-04 14:26:19 +02:00
Jan
4c6f9e0f13
feat: remove local rstudio ( #322 )
2025-06-27 10:55:53 +02:00
djuarezgf
a1cdc2659d
CCE Teiler and Export ( #323 )
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* Added Exporter to CCE
* Add Teiler to CCE
* Add EXPORTER_USER to adduser function
2025-06-25 15:53:29 +02:00
Pierre Delpy
92bc0557a3
fix: add obfuscation and basic auth to spot in cce and itcc ( #324 )
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Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2025-06-25 14:58:20 +02:00
djuarezgf
141f1f22d0
Use relative paths in teiler ( #320 )
2025-06-18 17:04:09 +02:00
Tobias Kussel
b4a788e010
docs: close Exporter code block in readme ( #318 )
2025-06-16 14:23:59 +02:00
djuarezgf
c33fbfc8bc
fix: Create Exporter User only if Exporter is enabled ( #317 )
2025-06-11 09:34:41 +02:00
Enola Knezevic
faa8abd4ee
chore: update eric.acc.root.crt.pem ( #316 )
2025-06-10 16:48:22 +02:00
djuarezgf
7693289d4d
docs: add Teiler and Exporter to the main README.md ( #315 )
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Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com >
2025-06-10 11:03:18 +02:00
djuarezgf
d482324361
feat: add Teiler and Exporter in BBMRI ( #312 )
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Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2025-06-05 16:55:03 +02:00
Martin Lablans
b7a42f3d3b
chore: externalize POSTGRES_TAG and bump postgres to 15.13 ( #313 )
2025-06-04 14:22:34 +02:00
Tim Schumacher
fd013232f5
Cache public organoid dashboard SQL query ( #309 )
2025-05-23 15:26:59 +02:00
DavidCroftDKFZ
eb52554892
docs: add faq ( #288 )
2025-05-22 18:10:40 +02:00
DavidCroftDKFZ
08c695e960
docs: Control import from Directory, improve README ( #297 )
2025-05-22 18:03:01 +02:00
DavidCroftDKFZ
1513fe1c6c
Added section relating to clearing data from Blaze ( #303 )
2025-05-22 18:01:43 +02:00
djuarezgf
af08a9fb08
chore: change some teiler variables ( #307 )
2025-05-20 16:24:24 +02:00
djuarezgf
b95f0efbe7
fix: add own url to teiler dashboard to make it offline compatible ( #305 )
2025-05-20 09:39:14 +02:00
Torben Brenner
99567e2b40
fix: Ensure transfair can properly communicate with the fhir server for requests ( #304 )
2025-05-19 17:01:37 +02:00
Jan
96ff6043a1
feat: allow transfair to talk to services behind the proxy ( #296 )
2025-05-09 13:52:33 +02:00
Jan
844ce3386e
chore(transfair): update transfair config ( #298 )
2025-05-09 11:30:26 +02:00
Martin Lablans
9782bf66b6
Code review: Move to /tmp/bridgehead/...
2025-05-08 09:18:02 +02:00
Tim Schumacher
87f0e8ad7f
Use temp directory for secret sync cache
2025-05-08 09:18:02 +02:00
Jan
7365be3e7b
chore(transfair): add option to disable tls verification ( #295 )
2025-04-17 12:01:45 +02:00
Enola Knezevic
c5d08c50a4
chore: add BBMRI ERIC acceptance env ( #294 )
2025-04-16 15:37:55 +02:00
Jan
72ecaadba8
fix: ssh-tunnel-setup.sh ( #293 )
2025-04-15 11:36:20 +02:00
Jan
2ddd535794
feat: ssh tunnel ( #292 )
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* Added ccp module for a ssh tunnel
Usage details under https://github.com/samply/ssh-tunnel
* chore: update ssh-tunnel image to harbor
* feat: ssh tunnel support diffrent port
* chore: fix indentation
* chore: move to top level modules
* docs: add ssh-tunnel docs
---------
Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de >
2025-04-14 10:45:15 +02:00
Torben Brenner
324c2b336d
Merge pull request #287 from tm16-medma/patch-1
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Update ovis-compose.yml
2025-04-14 08:19:20 +02:00
Jan
973547c322
chore(transfair): add new gw option ( #291 )
2025-04-11 08:37:31 +02:00
tm16-medma
e8cb85eade
adjusted traefik parameters
2025-04-09 14:00:39 +00:00
tm16-medma
c59c425ad4
Merge branch 'patch-1' of https://github.com/tm16-medma/bridgehead into patch-1
2025-04-09 13:45:01 +00:00
tm16-medma
e3f7f5d32b
Refactor Docker Compose
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- Replaced GUI_HOST with HOST
- Removed NODE_ENV
- Combine init_onco and backend service
- removed node_modules and .svelte-kit volumes
- removed mongodb volumes
- adjusted http_proxy and https_proxy
- adjusted path prefix from oaut2 to oauth2-ovis
- removed network-mode "host" in fhir-transformer service
2025-04-09 13:43:53 +00:00
Jan
6b649c9233
feat: expose transfair via traefik ( #290 )
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Note: Requires a bridgehead install to generate the basic auth user
2025-04-09 13:19:52 +02:00
tm16-medma
1b01bd81ff
Updated the fhir-transformer image and init_onco container to sleep after finishing
2025-04-03 15:04:01 +02:00
tm16-medma
86a2b78d8f
corrected a syntax error
2025-04-01 10:57:02 +00:00
tm16-medma
cf1ba43d39
refactor: restructure ovis-compose.yml and added MongoDB initialization to sh
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- Removed the traefik service and renamed traefik-forward-auth to ovis- with ovis-traefik-forward-auth the labels, however would need help there as i got no knowledge of how OAuth2 works (Torben initialized that container)
- Updated MongoDB service configuration to include a direct initialization script for user and operation collections in the sh instead of in the compose directly
- Adjusted volume paths to only use the /var/cache/bridgehead/ccp directory
- Adjusted frontend and backend service labels for Traefik routing to not use ports
- Cleaned up unnecessary network definitions and volumes.
- Renamed FHIR Server URL to bridgehead-ccp-blaze:8080/fhir
- Removed redundant entrypoint (python main.py) of fhir transformer
2025-04-01 10:46:48 +00:00
Tim Schumacher
3144ee5214
Fix GitLab token syncing for BBMRI
2025-03-31 11:08:59 +02:00
janskiba
68804dc71b
feat: add transfair setup to ccp
2025-03-26 13:11:43 +01:00
janskiba
e5aebfe382
chore!: update transfair config
2025-03-26 13:11:43 +01:00
tm16-medma
3b49faaeb4
Update ovis-compose.yml
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Please ignore the command in mongo :) It will be replaced soon with proper user authentication
2025-03-26 11:21:58 +01:00
Torben Brenner
6f3aba1eaa
feat: support self-signed cert on ttp ( #283 )
2025-03-12 15:45:55 +01:00
Jan
82ced89b33
chore: unify blaze versioning and upgrade to 0.32 ( #277 )
2025-03-12 12:52:00 +01:00
Martin Lablans
5d94bac0e2
Mount queries_to_cache.conf readonly ( #282 )
2025-03-10 16:03:05 +01:00
Tim Schumacher
83555540f5
chore: update central Secret Sync proxy ID ( #280 )
2025-03-10 12:08:19 +01:00
Pierre Delpy
e396e00178
Fix/ccp cql cache ( #279 )
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* fix: adapt focus caching to new cql and add focus caching for cce and itcc
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Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2025-03-07 12:20:38 +01:00
