Commit Graph
22 Commits
Author SHA1 Message Date
tm16-medmaandtm16-medma daf1d506fb Clean up proxy settings in ovis-compose.yml
Removed proxy configuration from ovis-compose.yml.
2026-07-14 15:36:31 +02:00
tm16-medma 2264f90478 refactor: align Bridgehead OVIS CCP overlay with upstream runtime contracts
Apply the PR #375 review feedback by removing Bridgehead-specific compose/setup overrides
that duplicated upstream OVIS behavior and by switching to the upstream-built Mongo image
that already contains init logic.
- rename CCP OVIS services to consistent upstream-style names (`ovis-*`) and update internal dependencies
- switch Mongo service image from direct `mongo:latest` + host-mounted init script to `docker.verbis.dkfz.de/ovis/ovis-backend-mongodb:latest`
- remove obsolete Mongo init bind mount (`/docker-entrypoint-initdb.d/init.js`) from compose
- drop redundant runtime overrides from compose (`restart`, `command`, `user`, `working_dir`)
- remove duplicated app-default/preprocessor env overrides (`OVIS_PREPROC_*`, misc backend defaults) and keep deployment wiring only
- fix Mongo connection env usage to `ADDRESS` and point services to `ovis-backend-database-mongodb`
- remove temporary root-compat Traefik redirect shim and keep mounted `/ccp-ovis` routing labels
- remove setup-time generation of Mongo init.js and related cache directory prep from `ccp/modules/ovis-setup.sh`
2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma aab9a8f07e Update Traefik rules in ovis-compose.yml 2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma fdbb4003c8 Remove blaze service dependency from ovis-compose.yml
Removed dependency condition on the blaze service.
2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma 7a68fbcdf1 Add dependency condition for blaze service 2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma de8a1e14fd Clear FHIR_USERNAME and FHIR_PASSWORD
Updated FHIR credentials to empty strings in ovis-compose.yml
2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma 50d66d6b3c Update ovis-compose.yml for backend image and import settings 2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma 52430081d4 Add Traefik labels for ovis-frontend routing 2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma 82601fc235 Clean up Traefik router settings in ovis-compose.yml
Removed unnecessary Traefik router configurations for compatibility.
2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma 98ae28a83b Add Traefik labels for ovis-frontend routing 2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma 64be3750aa Add Traefik labels for ovis-backend services 2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma aa9b163dc1 Add Traefik labels for ovis-frontend-ccp routes 2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma 5afebd6d3c Add OVIS_PUBLIC_BASE_PATH environment variable 2026-07-14 15:36:31 +02:00
Skiba Janandtm16-medma 8ff90a02d2 fix treafik routers 2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma 76c9e88f0c Refactor ovis-compose.yml to add new services 2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma 9b81eb7dbb Refactor ovis-compose.yml for latest OVis version 2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma 375fff1beb adjusted traefik parameters 2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma a7913f3c4f Refactor Docker Compose
- Replaced GUI_HOST with HOST
- Removed NODE_ENV
- Combine init_onco and backend service
- removed node_modules and .svelte-kit volumes
- removed mongodb volumes
- adjusted http_proxy and https_proxy
- adjusted path prefix from oaut2 to oauth2-ovis
- removed network-mode "host" in fhir-transformer service
2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma e1af2c7191 corrected a syntax error 2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma 54456b14f7 refactor: restructure ovis-compose.yml and added MongoDB initialization to sh
- Removed the traefik service and renamed traefik-forward-auth to ovis- with ovis-traefik-forward-auth the labels, however would need help there as i got no knowledge of how OAuth2 works (Torben initialized that container)
- Updated MongoDB service configuration to include a direct initialization script for user and operation collections in the sh instead of in the compose directly
- Adjusted volume paths to only use the /var/cache/bridgehead/ccp directory
- Adjusted frontend and backend service labels for Traefik routing to not use ports
- Cleaned up unnecessary network definitions and volumes.
- Renamed FHIR Server URL to bridgehead-ccp-blaze:8080/fhir
- Removed redundant entrypoint (python main.py) of fhir transformer
2026-07-14 15:36:31 +02:00
tm16-medmaandtm16-medma 732c0ab250 Update ovis-compose.yml
Please ignore the command in mongo :) It will be replaced soon with proper user authentication
2026-07-14 15:36:31 +02:00
janskibaandtm16-medma f6794f554c ovis wip 2026-07-14 15:36:31 +02:00