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Author SHA1 Message Date
JanandGitHub 9c8d0ee8f5 fix(dnpm): fix env subsitution (#333) 2025-07-25 10:58:07 +02:00
djuarezgfandGitHub fcad7104f0 mtba: fallback to keycloak test server pending migration 2025-07-23 09:53:14 +02:00
djuarezgfandGitHub 7e13e251f8 feat: migrate PSP to Authentik (#329) 2025-07-22 11:34:49 +02:00
JanandGitHub 2cfdc3ac3e feat(dnpm): allow setting custom dnpm image tag (#326) 2025-07-07 15:36:14 +02:00
djuarezgfandGitHub 43b24c2a62 Fixed: Authentik URL for Opal (#328) 
* Fixed: Authentik URL for Opal

* Removed: Unnecessary OIDC config in CCE and BBMRI

* KR with basic auth instead of OIDC
 2025-07-07 15:35:54 +02:00
djuarezgfGitHubJan
 		8414604257 feat: migrate OIDC Configuration from Keycloak to Authentik (#327) 
* Change: Authentik instead of Keycloak in CCP

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2025-07-04 14:26:19 +02:00
JanandGitHub 4c6f9e0f13 feat: remove local rstudio (#322) 2025-06-27 10:55:53 +02:00
djuarezgfandGitHub a1cdc2659d CCE Teiler and Export (#323) 
* Added Exporter to CCE

* Add Teiler to CCE

* Add EXPORTER_USER to adduser function
 2025-06-25 15:53:29 +02:00
Pierre DelpyGitHubp.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 		92bc0557a3 fix: add obfuscation and basic auth to spot in cce and itcc (#324) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2025-06-25 14:58:20 +02:00
djuarezgfandGitHub 141f1f22d0 Use relative paths in teiler (#320) 2025-06-18 17:04:09 +02:00
Tobias KusselandGitHub b4a788e010 docs: close Exporter code block in readme (#318) 2025-06-16 14:23:59 +02:00
djuarezgfandGitHub c33fbfc8bc fix: Create Exporter User only if Exporter is enabled (#317) 2025-06-11 09:34:41 +02:00
Enola KnezevicandGitHub faa8abd4ee chore: update eric.acc.root.crt.pem (#316) 2025-06-10 16:48:22 +02:00
djuarezgfGitHubTobias Kussel
 		7693289d4d docs: add Teiler and Exporter to the main README.md (#315) 
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
 2025-06-10 11:03:18 +02:00
djuarezgfGitHubJan
 		d482324361 feat: add Teiler and Exporter in BBMRI (#312) 
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2025-06-05 16:55:03 +02:00
Martin LablansandGitHub b7a42f3d3b chore: externalize POSTGRES_TAG and bump postgres to 15.13 (#313) 2025-06-04 14:22:34 +02:00
Tim SchumacherandGitHub fd013232f5 Cache public organoid dashboard SQL query (#309) 2025-05-23 15:26:59 +02:00
DavidCroftDKFZandGitHub eb52554892 docs: add faq (#288) 2025-05-22 18:10:40 +02:00
DavidCroftDKFZandGitHub 08c695e960 docs: Control import from Directory, improve README (#297) 2025-05-22 18:03:01 +02:00
DavidCroftDKFZandGitHub 1513fe1c6c Added section relating to clearing data from Blaze (#303) 2025-05-22 18:01:43 +02:00
djuarezgfandGitHub af08a9fb08 chore: change some teiler variables (#307) 2025-05-20 16:24:24 +02:00
djuarezgfandGitHub b95f0efbe7 fix: add own url to teiler dashboard to make it offline compatible (#305) 2025-05-20 09:39:14 +02:00
Torben BrennerandGitHub 99567e2b40 fix: Ensure transfair can properly communicate with the fhir server for requests (#304) 2025-05-19 17:01:37 +02:00
JanandGitHub 96ff6043a1 feat: allow transfair to talk to services behind the proxy (#296) 2025-05-09 13:52:33 +02:00
JanandGitHub 844ce3386e chore(transfair): update transfair config (#298) 2025-05-09 11:30:26 +02:00
Martin LablansandTim Schumacher 9782bf66b6 Code review: Move to /tmp/bridgehead/... 2025-05-08 09:18:02 +02:00
Tim SchumacherandTim Schumacher 87f0e8ad7f Use temp directory for secret sync cache 2025-05-08 09:18:02 +02:00
JanandGitHub 7365be3e7b chore(transfair): add option to disable tls verification (#295) 2025-04-17 12:01:45 +02:00
Enola KnezevicandGitHub c5d08c50a4 chore: add BBMRI ERIC acceptance env (#294) 2025-04-16 15:37:55 +02:00
JanandGitHub 72ecaadba8 fix: ssh-tunnel-setup.sh (#293) 2025-04-15 11:36:20 +02:00
JanGitHubTobias Kussel
 		2ddd535794 feat: ssh tunnel (#292) 
* Added ccp module for a ssh tunnel

Usage details under https://github.com/samply/ssh-tunnel

* chore: update ssh-tunnel image to harbor

* feat: ssh tunnel support diffrent port

* chore: fix indentation

* chore: move to top level modules

* docs: add ssh-tunnel docs

---------

Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de>
 2025-04-14 10:45:15 +02:00
Torben BrennerandGitHub 324c2b336d Merge pull request #287 from tm16-medma/patch-1 
Update ovis-compose.yml
 2025-04-14 08:19:20 +02:00
JanandGitHub 973547c322 chore(transfair): add new gw option (#291) 2025-04-11 08:37:31 +02:00
tm16-medma e8cb85eade adjusted traefik parameters 2025-04-09 14:00:39 +00:00
tm16-medma c59c425ad4 Merge branch 'patch-1' of https://github.com/tm16-medma/bridgehead into patch-1 2025-04-09 13:45:01 +00:00
tm16-medma e3f7f5d32b Refactor Docker Compose 
- Replaced GUI_HOST with HOST
- Removed NODE_ENV
- Combine init_onco and backend service
- removed node_modules and .svelte-kit volumes
- removed mongodb volumes
- adjusted http_proxy and https_proxy
- adjusted path prefix from oaut2 to oauth2-ovis
- removed network-mode "host" in fhir-transformer service
 2025-04-09 13:43:53 +00:00
JanandGitHub 6b649c9233 feat: expose transfair via traefik (#290) 
Note: Requires a bridgehead install to generate the basic auth user
 2025-04-09 13:19:52 +02:00
tm16-medmaandGitHub 1b01bd81ff Updated the fhir-transformer image and init_onco container to sleep after finishing 2025-04-03 15:04:01 +02:00
tm16-medma 86a2b78d8f corrected a syntax error 2025-04-01 10:57:02 +00:00
tm16-medma cf1ba43d39 refactor: restructure ovis-compose.yml and added MongoDB initialization to sh 
- Removed the traefik service and renamed traefik-forward-auth to ovis- with ovis-traefik-forward-auth the labels, however would need help there as i got no knowledge of how OAuth2 works (Torben initialized that container)
- Updated MongoDB service configuration to include a direct initialization script for user and operation collections in the sh instead of in the compose directly
- Adjusted volume paths to only use the /var/cache/bridgehead/ccp directory
- Adjusted frontend and backend service labels for Traefik routing to not use ports
- Cleaned up unnecessary network definitions and volumes.
- Renamed FHIR Server URL to bridgehead-ccp-blaze:8080/fhir
- Removed redundant entrypoint (python main.py) of fhir transformer
 2025-04-01 10:46:48 +00:00
Tim SchumacherandTim Schumacher 3144ee5214 Fix GitLab token syncing for BBMRI 2025-03-31 11:08:59 +02:00
janskibaandTorben Brenner 68804dc71b feat: add transfair setup to ccp 2025-03-26 13:11:43 +01:00
janskibaandTorben Brenner e5aebfe382 chore!: update transfair config 2025-03-26 13:11:43 +01:00
tm16-medmaandGitHub 3b49faaeb4 Update ovis-compose.yml 
Please ignore the command in mongo :) It will be replaced soon with proper user authentication
 2025-03-26 11:21:58 +01:00
Torben BrennerandGitHub 6f3aba1eaa feat: support self-signed cert on ttp (#283) 2025-03-12 15:45:55 +01:00
JanandGitHub 82ced89b33 chore: unify blaze versioning and upgrade to 0.32 (#277) 2025-03-12 12:52:00 +01:00
Martin LablansandGitHub 5d94bac0e2 Mount queries_to_cache.conf readonly (#282) 2025-03-10 16:03:05 +01:00
Tim SchumacherandGitHub 83555540f5 chore: update central Secret Sync proxy ID (#280) 2025-03-10 12:08:19 +01:00
Pierre DelpyGitHubp.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 		e396e00178 Fix/ccp cql cache (#279) 
* fix: adapt focus caching to new cql and add focus caching for cce and itcc

---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2025-03-07 12:20:38 +01:00
Tim SchumacherandTim Schumacher ecb29830e4 Send the origin of /etc/bridgehead repo to Secret Sync 
This is to anticipate an upcoming change in Secret Sync that will allow it to support multiple GitLab servers, e.g. verbis GitLab and BBMRI GitLab.
 2025-03-05 11:04:22 +01:00