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bridgehead
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461 Commits

Author SHA1 Message Date
Martin Lablans 380511d3bb Don't delete docker images if BK is not running 2023-03-08 10:37:37 +01:00
lablans 0ff153ef22 Use project name. Add is-running function. 2023-03-08 09:01:05 +00:00
Tobias Kussel ea3e148fd3
Merge pull request #62 from samply/feature/develop-install 
Add developer install
 2023-02-27 14:58:40 +01:00
Tobias Kussel b0086ee4af
Merge pull request #60 from samply/feature/check-for-wsl 
During install, check if running in WSL and if systemd is present
 2023-02-27 13:16:07 +01:00
Tobias Kussel cedc97477f Add developer install option to the documentation 2023-02-27 13:02:59 +01:00
Tobias Kussel 5d38f48f68 Add developer install 2023-02-24 16:32:17 +01:00
Tobias Kussel bfc00b9967 Prevent variable splitting in wsl check and improve error message 2023-02-24 11:41:05 +01:00
Tobias Kussel 7a350a8c9b Fix string comparison in WSL check 2023-02-24 11:29:06 +01:00
patrickskowronekdkfz a036d0a88c
Merge pull request #61 from samply/develop 
Merge develop into main
 2023-02-24 08:35:59 +01:00
Martin Lablans 857e351b88 Support gitmirror for github.com repo 2023-02-23 18:05:53 +01:00
Martin Lablans 8b2e99200e Fix typo 2023-02-23 18:05:34 +01:00
Patrick Skowronek 2dc36433bf Fixed naming of site in exliquid script 2023-02-23 18:05:19 +01:00
Martin Lablans 3023b82bb1 Switch beam images to develop tag 2023-02-23 18:05:19 +01:00
Patrick Skowronek fdda14c1be Fixed naming of site in exliquid script 2023-02-23 14:26:59 +01:00
Tobias Kussel 4578c77d4b Fix systemd check 2023-02-22 15:42:52 +01:00
Tobias Kussel 191e986364 Add check for installation in WSL and for systemd 2023-02-22 15:32:21 +01:00
Martin Lablans 5fdeaa7ca4
Merge pull request #59 from samply/switch-images-to-develop 
Use beam-proxy:develop
 2023-02-21 11:45:26 +01:00
Martin Lablans 90773ea92a Switch beam images to develop tag 2023-02-21 09:26:53 +01:00
Croft 8dd1b01842 Updates for PR52 
* Incorporated some of Martin's suggestions (the ones where I had no questions)
* Updated the table of contents to reflect the current structure of the document.
 2023-02-20 16:17:45 +01:00
Pierre Delpy e4ac27061a
Merge pull request #57 from samply/feature/idManagementModule 
Added Module for Id-Management
 2023-02-09 10:22:30 +01:00
Torben Brenner 5a7dd1d0ae fix: Use Mapped Site Id in Patientlist 2023-02-09 10:07:05 +01:00
Torben Brenner a6975e37ac fix: Added Image Updates for activated Modules 2023-02-09 09:58:51 +01:00
Torben Brenner a1cd5a206e fix: Repaired check for Auto Updates 2023-02-09 09:50:30 +01:00
Torben Brenner 64095ac8dd feat: Added Upload ApiKey to Patientlist 2023-02-09 09:15:29 +01:00
Torben Brenner d728ccd886 refactor: Fixated Postgres Version to 15.1 
All Minor Updates will cause a crashing postgres on start
 2023-02-08 15:02:35 +01:00
Torben Brenner c88919c926 feature: Ensured the mapping to legacy ids works 2023-02-08 14:42:52 +01:00
Torben Brenner cdf9c359f0
Merge pull request #56 from samply/feature/idManagementModule_Rebase 
Updated MTBA Module
 2023-02-08 14:04:43 +01:00
Croft 068125c062 Updated environemnt variable names so that they start with "DS_" 2023-02-08 11:03:35 +01:00
p.delpy@dkfz-heidelberg.de e9455a5558 update mtba config 2023-02-07 16:39:43 +01:00
p.delpy@dkfz-heidelberg.de bce28342f9 update docker and host paths 2023-02-07 16:33:29 +01:00
Torben Brenner e2d90447f7 refactor: Changed Trigger of the IDM Module 2023-02-07 16:31:58 +01:00
Torben Brenner a3ba98a2fd Added Configuration for Local ID-Management 2023-02-07 16:31:58 +01:00
Torben Brenner 73b1993628
Merge pull request #51 from samply/refactor/directoryNames 
refactor: Changed Paths for persistent Data
 2023-02-07 16:27:50 +01:00
Torben Brenner 2445a59785 refacotr: Restructured passing Patientlist Seeds 2023-02-07 16:26:07 +01:00
Torben Brenner 98afeac701 refactor: Use -db as Indicator for Backups 2023-02-07 16:23:49 +01:00
Torben Brenner a37bf79c03 refactor: Added Monitoring for backup permissions 2023-02-07 16:23:49 +01:00
Torben Brenner 17d48a3636 refactor: Expect User to select a Backup Directory 2023-02-07 16:23:49 +01:00
Torben Brenner 713dc5f4e9 refactor: Move Backups after the Update 2023-02-07 16:23:18 +01:00
Torben Brenner 1befa65f35 refactor: Changed Salt for patientlist db password 2023-02-07 16:23:18 +01:00
Torben Brenner 0d998ab871 refactor: Move persistent data to named volumes 2023-02-07 16:23:18 +01:00
Torben Brenner 1c3fa4fa3f refactor: Changed Paths for persistent Data 2023-02-07 16:22:28 +01:00
Martin Lablans c75c9ed673
Merge pull request #55 from samply/use-beam-main-tag 
Use beam-proxy "main" tag
 2023-02-03 13:38:15 +01:00
Martin Lablans 6d8e877899 Use beam-proxy "main" tag 2023-02-03 13:28:44 +01:00
patrickskowronekdkfz d48d325db6
Merge pull request #54 from samply/update/blaze19 
Updated Blaze to 0.19
 2023-02-02 12:38:43 +01:00
Patrick Skowronek eb37d16b84 Updated Blaze to 0.19 2023-01-31 15:44:30 +01:00
Croft 92dd4b84c1 Incorporated new environemnt variable nameing for Directory sync 2023-01-31 09:43:26 +01:00
Croft 3e55030b1b Added a Directory sync component 
* Added new container to bbmri/docker-compose.yml.
* Added set up documentation to README.
 2023-01-27 13:49:52 +01:00
Croft 6123a9aeba Addressed Torben's comments to PR 52 
- Included email for CCP repositories.
- Used journalctl instead of docker ps for Bridgehead status.
 2023-01-27 11:08:00 +01:00
Croft 7d9cec562e Corrected site naming convention to comply with DKTK 2023-01-27 09:46:30 +01:00
Croft 90fe31b6c9 Described Docker logging in README 2023-01-26 11:15:55 +01:00