samply
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bridgehead
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63 Commits

Author SHA1 Message Date
Gerhard Salvini e309dc495a Improved docker-compose for transFAIR 
In particular, corrected the code for detecting CSV files in the data directory.
The old code could not handle more than one CSV file.
 2024-06-18 15:28:37 +02:00
Gerhard Salvini 1b82207934 Migrated TransFAIR start logic from launch file to docker-compose 
The start-up logic for TransFAIR is specific to the ECDC/EHDS2 Bridgehead,
and did not belong in the TransFAIR repo. This commit fixes that.

It also honours the change of the TransFAIR branch name for this
project, "ehds2".
 2024-03-26 17:00:42 +01:00
Gerhard Salvini b9b44d2530 Using standardized conditions for starting transfair 2024-03-19 09:07:56 +01:00
Gerhard Salvini 0d1f425df0 Auto-build focus and transfair 
This auto-build functionality is a workaround for a bug, described in README.

The README now has additional documentation for EHDS2.

The root certificate files have been expanded to contain certificates for
both the ECDC and the DKFZ setup.
 2024-03-18 11:03:50 +01:00
lablans 392afb6410 Fix code 2023-10-24 07:23:24 +00:00
lablans f855a19865 Fix sed (?) 2023-10-24 07:12:18 +00:00
lablans bbfc607104 Always define new vars 2023-10-24 07:07:06 +00:00
lablans f008b18760 Redo proxy, set HTTPS_PROXY_HOST and HTTPS_PROXY_PORT 2023-10-24 07:01:22 +00:00
Tobias Kussel e0990d99cb Comment out HTTP proxy parsing 2023-10-23 11:06:59 +00:00
Martin Lablans 74817a21da Rewrote proxy detection logic to deal with all combinations of no/authenticated/unauthenticated proxy servers 2023-10-20 15:59:24 +02:00
Patrick Skowronek 68cd62b981 reaf: var naming for proxy usage in our bridgehead scripts 2023-10-10 10:43:22 +02:00
Patrick Skowronek 85446b0a3e Added SECURE_PROXY if the https and http proxy are the same 2023-10-09 09:43:30 +02:00
Patrick Skowronek 4bdad68da5 Added proxy user + pw detection 2023-10-05 09:43:57 +02:00
Pierre Delpy 3c0a994237 use docker cache for beam-enroll and vaultfetcher 2023-09-27 09:22:11 +02:00
janskiba 6cfa745385 Remove -it from docker run 2023-08-17 11:21:20 +00:00
p.delpy@dkfz-heidelberg.de af25df79e3 refactor addUser to adduser - lowercase 2023-08-15 15:42:42 +02:00
Pierre Delpy 829102f23e
Merge branch 'main' into feature/custom-basic-auth 2023-08-15 14:24:19 +02:00
p.delpy@dkfz-heidelberg.de dc0fc286b1 add generic bash function addBasicAuthUser 2023-08-08 09:28:59 +02:00
Martin Lablans 54d83736c3 Move BBMRI-ERIC, GBN to modules 2023-08-07 15:19:41 +02:00
p.delpy@dkfz-heidelberg.de 788e4ea9f7 add generic bash function addBasicAuthUser 2023-07-27 13:53:20 +02:00
Tobias Kussel 3e1659a38d Modularize DNPM components 2023-05-10 10:54:05 +00:00
Torben Brenner 25081c1bf4 hotfix: Switch to old Project Name 2023-03-09 15:28:07 +01:00
Martin Lablans 33b50372c6 Pull docker images from DKFZ mirror 2023-03-09 11:16:34 +01:00
Martin Lablans 380511d3bb Don't delete docker images if BK is not running 2023-03-08 10:37:37 +01:00
lablans 0ff153ef22 Use project name. Add is-running function. 2023-03-08 09:01:05 +00:00
Torben Brenner 1ffc9b9cd5 feature: Added automated Backups for PostgreSQL 2023-01-12 08:26:49 +01:00
Torben Brenner 6d24dbce7f Added Configuration for Local ID-Management 2023-01-12 08:26:49 +01:00
Martin Lablans 5593ae38bb Retry git fetch/pull to make it more resilient to e.g. network outages 2022-11-29 08:10:21 +00:00
Torben Brenner b175c55f5c Shorten installation by including some installation steps into a shell script 2022-11-18 18:09:43 +01:00
Martin Lablans c31de507a6
Merge branch 'feature/samplyBeam' into log_git_errors 2022-11-04 16:23:49 +01:00
Martin Lablans ceda942731 Remove errors in old git versions 2022-11-04 16:12:24 +01:00
Martin Lablans 9b3acb4899 Report git errors 2022-11-04 15:29:00 +01:00
Martin Lablans 6b2168ff11 Allow to read hostname from config file 2022-11-04 13:16:57 +01:00
Martin Lablans 62b8cabb31 Fix getting LDM_LOGIN 2022-11-03 18:14:11 +01:00
Martin Lablans 3ead08fae1 Add export 2022-11-03 17:38:46 +01:00
Martin Lablans 6394e1fa82 Check for LDM_PASSWORD 2022-11-03 17:23:25 +01:00
Martin Lablans 038d8d69f6 Make LDM password nicer 2022-11-03 17:19:15 +01:00
Martin Lablans 5e31da5139 Unfortunately, we cannot support docker snap installations, cf. https://askubuntu.com/questions/1374480/docker-compose-installed-with-snap-gives-error-on-yml-file 
This reverts commit 292d71b6c2.
 2022-10-28 15:25:06 +02:00
Martin Lablans 292d71b6c2 Support docker installation via snap, e.g. Ubuntu 22.04 2022-10-28 15:14:34 +02:00
Martin Lablans 2aef5f29c3 Move to functions.sh 2022-10-28 10:12:21 +02:00
Martin Lablans 3351e696af Don't pull ubuntu image on every startup. Use server's full hostname. 2022-10-26 10:44:32 +02:00
Martin Lablans 07c0c4534e Make this work for BBMRI-ERIC 2022-10-25 11:45:01 +02:00
Martin Lablans e273e97d9c
Certificate enrollment (#24) 2022-10-17 14:38:34 +02:00
Martin Lablans 8a62743894
Monitoring for bridgehead startup and update (#22) 2022-10-06 10:45:50 +02:00
Patrick Skowronek 8c982c939e Fixed merge conflicts 2022-07-19 14:18:48 +02:00
Patrick Skowronek 411edbf0e7 Merge branch 'version-1' into develop 2022-07-12 11:06:19 +02:00
Martin Lablans 37d954e304 New function assertVarsNotEmpty() 2022-05-31 13:56:12 +02:00
Martin Lablans 57483e78d4 Move checkOwner() to functions.sh 2022-05-31 13:55:40 +02:00
Martin Lablans ff3d6fb4fe Bugfix in fetchVarsFromVaultByFile: Detect variables with values à la "<VAULT>" 2022-05-31 13:40:25 +02:00
Martin Lablans 9f76b0c739 Refactor fetchVarsFromVault 2022-05-31 09:37:31 +02:00