fix: squash me 4 - test backendurl

README.md

@@ -22,13 +22,11 @@ This repository is the starting point for any information and tools you will nee
     - [TLS terminating proxies](#tls-terminating-proxies)
     - [File structure](#file-structure)
     - [BBMRI-ERIC Directory entry needed](#bbmri-eric-directory-entry-needed)
-    - [Directory sync tool](#directory-sync-tool)
     - [Loading data](#loading-data)
 4. [Things you should know](#things-you-should-know)
     - [Auto-Updates](#auto-updates)
     - [Auto-Backups](#auto-backups)
     - [Non-Linux OS](#non-linux-os)
-    - [FAQ](#faq)
 5. [Troubleshooting](#troubleshooting)
     - [Docker Daemon Proxy Configuration](#docker-daemon-proxy-configuration)
     - [Monitoring](#monitoring)
@@ -303,38 +301,26 @@ Once you have added your biobank to the Directory you got persistent identifier
 
 ### Directory sync tool
 
-The Bridgehead's **Directory Sync** is an optional feature that keeps the BBMRI-ERIC Directory up to date with your local data, e.g. number of samples. Conversely, it can also update the local FHIR store with the latest contact details etc. from the  BBMRI-ERIC Directory.
+The Bridgehead's **Directory Sync** is an optional feature that keeps the Directory up to date with your local data, e.g. number of samples. Conversely, it also updates the local FHIR store with the latest contact details etc. from the Directory. You must explicitly set your country specific directory URL, username and password to enable this feature.
 
 You should talk with your local data protection group regarding the information that is published by Directory sync.
 
-To enable it, you will need to explicitly set the username and password variables for BBMRI-ERIC Directory login in the configuration file of your GitLab repository (e.g. ```bbmri.conf```). Here is an example minimal config:
+Full details can be found in [directory_sync_service](https://github.com/samply/directory_sync_service).
+
+To enable it, you will need to set these variables to the ```bbmri.conf``` file of your GitLab repository. Here is an example config:
 
 ```
 DS_DIRECTORY_USER_NAME=your_directory_username
 DS_DIRECTORY_USER_PASS=your_directory_password
 ```
-Please contact your National Node or Directory support (directory-dev@helpdesk.bbmri-eric.eu) to obtain these credentials.
+Please contact your National Node to obtain this information.
 
-The following environment variables can be used from within your config file to control the behavior of Directory sync:
+Optionally, you **may** change when you want Directory sync to run by specifying a [cron](https://crontab.guru) expression, e.g. `DS_TIMER_CRON="0 22 * * *"` for 10 pm every evening.
 
-| Variable                           | Purpose                                                                                                                                                              | Default if not specified               |
-|:-----------------------------------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------|:---------------------------------------|
-| DS_DIRECTORY_URL                   | Base URL of the Directory                                                                                                                                            | https://directory-backend.molgenis.net |
-| DS_DIRECTORY_USER_NAME             | User name for logging in to Directory **Mandatory**                                                                                                                  |                                        |
-| DS_DIRECTORY_USER_PASS             | Password for logging in to Directory **Mandatory**                                                                                                                   |                                        |
-| DS_DIRECTORY_DEFAULT_COLLECTION_ID | ID of collection to be used if not in samples                                                                                                                        |                                        |
-| DS_DIRECTORY_ALLOW_STAR_MODEL      | Set to 'True' to send star model info to Directory                                                                                                                   | True                                  |
-| DS_FHIR_STORE_URL                  | URL for FHIR store                                                                                                                                                   | http://bridgehead-bbmri-blaze:8080     |
-| DS_TIMER_CRON                      | Execution interval for Directory sync, [cron](https://crontab.guru) format                                                                                           | 0 22 * * *                             |
-| DS_IMPORT_BIOBANKS                 | Set to 'True' to import biobank metadata from Directory                                                                                                              | True                                  |
-| DS_IMPORT_COLLECTIONS              | Set to 'True' to import collection metadata from Directory                                                                                                           | True                                  |
-
-Once you have finished editing the config, the Bridgehead will autoupdate the config with the values and will sync data at regular intervals, using the time specified in DS_TIMER_CRON.
+Once you edited the gitlab config, the bridgehead will autoupdate the config with the values and will sync the data.
 
 There will be a delay before the effects of Directory sync become visible. First, you will need to wait until the time you have specified in ```TIMER_CRON```. Second, the information will then be synchronized from your national node with the central European Directory. This can take up to 24 hours.
 
-More details of Directory sync can be found in [directory_sync_service](https://github.com/samply/directory_sync_service).
-
 ### Loading data
 
 The data accessed by the federated search is held in the Bridgehead in a FHIR store (we use Blaze).
@@ -354,24 +340,6 @@ The storage space on your hard drive will depend on the number of FHIR resources
 
 For more information on Blaze performance, please refer to [import performance](https://github.com/samply/blaze/blob/master/docs/performance/import.md).
 
-### Clearing data
-
-The Bridgehead's FHIR store, Blaze, saves its data in a Docker volume. This means that the data will persist even if you stop the Bridgehead. You can clear existing data from the FHIR store by deleting the relevant Docker volume.
-
-First, stop the Bridgehead:
-```shell
-sudo systemctl stop bridgehead@<PROJECT>.service
-```
-Now remove the volume:
-```shell
-docker volume rm <PROJECT>_blaze-data
-```
-Finally, restart the Bridgehead:
-```shell
-sudo systemctl start bridgehead@<PROJECT>.service
-```
-You will need to do this for example if you are using a VM as a test environment and you subsequently want to use the same VM for production.
-
 #### ETL for BBMRI and GBA
 
 Normally, you will need to build your own ETL to feed the Bridgehead. However, there is one case where a short cut might be available:
@@ -418,54 +386,6 @@ We have tested the installation procedure with an Ubuntu 22.04 guest system runn
 
 Installation under WSL ought to work, but we have not tested this.
 
-### FAQ
-
-**Q: How is the security of GitHub pulls, volumes/containers, and image signing ensured?**
-
-A: Changes to Git branches that could be delivered to sites (main and develop) must be accepted via a pull request with at least two positive reviews.
-Containers/images are not built manually, but rather automatically through a CI/CD pipeline, so that an image can be rolled back to a defined code version at any time without changes.
-**Note:** If firewall access for (outgoing) connections to GitHub and/or Docker Hub is problematic at the site, mirrors for both services are available, operated by the DKFZ.
-
-**Q: How is authentication between users and components regulated?**
-
-A: When setting up a Bridgehead, a private key and a so-called Certificate Sign Request (CSR) are generated locally. This CSR is manually signed by the broker operator, which allows the Bridgehead access to the network infrastructure.
-All communication runs via Samply.Beam and is therefore end-to-end encrypted, but also signed. This allows the integrity and authenticity of the sender to be technically verified (which happens automatically both in the broker and at the recipients).
-The connection to the broker is additionally secured using traditional TLS (transport encryption over https).
-
-**Q: Are there any statistics on incoming traffic from the Bridgehead (what goes in and what goes out)?**
-
-A: Incoming and outgoing traffic can only enter/leave the Bridgehead via a forward or reverse proxy, respectively. These components log all connections.
-Statistical analysis is not currently being conducted, but is on the roadmap for some projects. We are also working on a dashboard for all tasks/responses delivered via Samply.Beam.
-
-**Q: How is container access controlled, and what permission level is used?**
-
-A: Currently, it is not possible to run the Bridgehead "out-of-the-box" as a rootless Docker Compose stack. The main reason is the operation of the reverse proxy (Traefik), which binds to the privileged ports 80 (HTTP) and 443 (HTTPS).
-Otherwise, there are no known technical obstacles, although we don't have concrete experience implementing this.
-At the file system level, a "bridgehead" user is created during installation, which manages the configuration and Bridgehead folders.
-
-**Q: Is a cloud installation (not a company-owned one, but an external service provider) possible?**
-
-A: Technically, yes. This is primarily a data protection issue between the participant and their cloud provider.
-The Bridgehead contains a data storage system that, during use, contains sensitive patient and sample data.
-There are cloud providers with whom appropriately worded contracts can be concluded to make this possible.
-Of course, the details must be discussed with the responsible data protection officer.
-
-**Q: What needs to be considered regarding the Docker distribution/registry, and how is it used here?**
-
-A: The Bridgehead images are located both in Docker Hub and mirrored in a registry operated by the DKFZ.
-The latter is used by default, avoiding potential issues with Docker Hub URL activation or rate limits.
-When using automatic updates (highly recommended), an daily check is performed for:
-- site configuration updates
-- Bridgehead software updates
-- container image updates
-
-If updates are found, they are downloaded and applied.
-See the first question for the control mechanism.
-
-**Q: Is data only transferred one-way (Bridgehead/FHIR Store → Central/Locator), or is two-way access necessary?**
-
-A: By using Samply.Beam, only one outgoing connection to the broker is required at the network level (i.e., Bridgehead → Broker).
-
 ## Troubleshooting
 
 ### Docker Daemon Proxy Configuration

bbmri/docker-compose.yml

@@ -4,7 +4,7 @@ version: "3.7"
 
 services:
   blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
+    image: docker.verbis.dkfz.de/cache/samply/blaze:0.31
     container_name: bridgehead-bbmri-blaze
     environment:
       BASE_URL: "http://bridgehead-bbmri-blaze:8080"

bbmri/modules/directory-sync-compose.yml

@@ -12,7 +12,5 @@ services:
       DS_DIRECTORY_MOCK: ${DS_DIRECTORY_MOCK}
       DS_DIRECTORY_DEFAULT_COLLECTION_ID: ${DS_DIRECTORY_DEFAULT_COLLECTION_ID}
       DS_DIRECTORY_COUNTRY: ${DS_DIRECTORY_COUNTRY}
-      DS_IMPORT_BIOBANKS: ${DS_IMPORT_BIOBANKS:-true}
-      DS_IMPORT_COLLECTIONS: ${DS_IMPORT_COLLECTIONS:-true}
     depends_on:
       - "blaze"

bbmri/modules/eric-setup.sh

@@ -10,10 +10,6 @@ if [ "${ENABLE_ERIC}" == "true" ]; then
 			export ERIC_BROKER_ID=broker.bbmri.samply.de
 			export ERIC_ROOT_CERT=eric
 			;;
-		"acceptance")
-			export ERIC_BROKER_ID=broker-acc.bbmri-acc.samply.de
-			export ERIC_ROOT_CERT=eric.acc
-			;;
 		"test")
 			export ERIC_BROKER_ID=broker-test.bbmri-test.samply.de
 			export ERIC_ROOT_CERT=eric.test

bbmri/modules/eric.acc.root.crt.pem

@@ -1,20 +0,0 @@
------BEGIN CERTIFICATE-----
-MIIDNTCCAh2gAwIBAgIUE/wu6FmI+KSMOalI65b+lI3HI4cwDQYJKoZIhvcNAQEL
-BQAwFjEUMBIGA1UEAxMLQnJva2VyLVJvb3QwHhcNMjQwOTE2MTUyMzU0WhcNMzQw
-OTE0MTUyNDI0WjAWMRQwEgYDVQQDEwtCcm9rZXItUm9vdDCCASIwDQYJKoZIhvcN
-AQEBBQADggEPADCCAQoCggEBAOt1I1FQt2bI4Nnjtg8JBYid29cBIkDT4MMb45Jr
-ays24y4R3WO7VJK9UjNduSq/A1jlA0W0A/szDf8Ojq6bBtg+uL92PTDjYH1QXwX0
-c7eMo2tvvyyrs/cb2/ovDBQ1lpibcxVmVAv042ASmil3SdqKKXpv3ATnF9I7V4cv
-fwB56FChaGIov5EK+9JOMjTx6oMlBEgUFR6qq/lSqM9my0HYwUFbX2W+nT9EKEIP
-9UP1eyfRZR3E/+oticnm/cS20BGCbjoYrNgLthXKyaASuhGoElKs8EZ3h9MiI+u0
-DpR0KpePhAkMLugBrgYWqkMwwD1684LfC4YVQrsLwzo5OW8CAwEAAaN7MHkwDgYD
-VR0PAQH/BAQDAgEGMA8GA1UdEwEB/wQFMAMBAf8wHQYDVR0OBBYEFPbXs3g3lMjH
-1JMe0a5aVbN7lB92MB8GA1UdIwQYMBaAFPbXs3g3lMjH1JMe0a5aVbN7lB92MBYG
-A1UdEQQPMA2CC0Jyb2tlci1Sb290MA0GCSqGSIb3DQEBCwUAA4IBAQBM5RsXb2HN
-FpC1mYfocXAn20Zu4d603qmc/IqkiOWbp36pWo+jk1AxejyRS9hEpQalgSnvcRPQ
-1hPEhGU+wvI0WWVi/01iNjVbXmJNPQEouXQWAT17dyp9vqQkPw8LNzpSV/qdPgbT
-Z9o3sZrjUsSLsK7A7Q5ky4ePkiJBaMsHeAD+wqGwpiJ4D2Xhp8e1v36TWM0qt2EA
-gySx9isx/jeGGPBmDqYB9BCal5lrihPN56jd+5pCkyXeZqKWiiXFJKXwcwxctYZc
-ADHIiTLLPXE8LHTUJAO51it1NAZ1S24aMzax4eWDXcWO7/ybbx5pkYkMd6EqlKHd
-8riQJIhY4huX
------END CERTIFICATE-----

bbmri/modules/exporter.md

@@ -1,15 +0,0 @@
-# Exporter and Reporter
-
-
-## Exporter
-The exporter is a REST API that exports the data of the different databases of the bridgehead in a set of tables.
-It can accept different output formats as CSV, Excel, JSON or XML. It can also export data into Opal.
-
-## Exporter-DB
-It is a database to save queries for its execution in the exporter. 
-The exporter manages also the different executions of the same query in through the database.
-
-## Reporter
-This component is a plugin of the exporter that allows to create more complex Excel reports described in templates.
-It is compatible with different template engines as Groovy, Thymeleaf,...
-It is perfect to generate a document as our traditional CCP quality report.

bbmri/modules/teiler-compose.yml

@@ -1,73 +0,0 @@
-version: "3.7"
-
-services:
-
-  teiler-orchestrator:
-    image: docker.verbis.dkfz.de/cache/samply/teiler-orchestrator:latest
-    container_name: bridgehead-teiler-orchestrator
-    labels:
-      - "traefik.enable=true"
-      - "traefik.http.routers.teiler_orchestrator_bbmri.rule=PathPrefix(`/bbmri-teiler`)"
-      - "traefik.http.services.teiler_orchestrator_bbmri.loadbalancer.server.port=9000"
-      - "traefik.http.routers.teiler_orchestrator_bbmri.tls=true"
-      - "traefik.http.middlewares.teiler_orchestrator_bbmri_strip.stripprefix.prefixes=/bbmri-teiler"
-      - "traefik.http.routers.teiler_orchestrator_bbmri.middlewares=teiler_orchestrator_bbmri_strip"
-    environment:
-      TEILER_BACKEND_URL: "https://${HOST}/bbmri-teiler-backend"
-      TEILER_DASHBOARD_URL: "https://${HOST}/bbmri-teiler-dashboard"
-      DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
-      HTTP_RELATIVE_PATH: "/bbmri-teiler"
-
-  teiler-dashboard:
-    image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
-    container_name: bridgehead-teiler-dashboard
-    labels:
-      - "traefik.enable=true"
-      - "traefik.http.routers.teiler_dashboard_bbmri.rule=PathPrefix(`/bbmri-teiler-dashboard`)"
-      - "traefik.http.services.teiler_dashboard_bbmri.loadbalancer.server.port=80"
-      - "traefik.http.routers.teiler_dashboard_bbmri.tls=true"
-      - "traefik.http.middlewares.teiler_dashboard_bbmri_strip.stripprefix.prefixes=/bbmri-teiler-dashboard"
-      - "traefik.http.routers.teiler_dashboard_bbmri.middlewares=teiler_dashboard_bbmri_strip"
-    environment:
-      DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
-      TEILER_BACKEND_URL: "https://${HOST}/bbmri-teiler-backend"
-      TEILER_DASHBOARD_URL: "https://${HOST}/bbmri-teiler-dashboard"
-      OIDC_URL: "${OIDC_URL}"
-      OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
-      OIDC_TOKEN_GROUP: "${OIDC_GROUP_CLAIM}"
-      TEILER_ADMIN_NAME: "${OPERATOR_FIRST_NAME} ${OPERATOR_LAST_NAME}"
-      TEILER_ADMIN_EMAIL: "${OPERATOR_EMAIL}"
-      TEILER_ADMIN_PHONE: "${OPERATOR_PHONE}"
-      TEILER_PROJECT: "${PROJECT}"
-      EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
-      TEILER_ORCHESTRATOR_URL: "https://${HOST}/bbmri-teiler"
-      TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/bbmri-teiler"
-      TEILER_USER: "${OIDC_USER_GROUP}"
-      TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
-      REPORTER_DEFAULT_TEMPLATE_ID: "bbmri-qb"
-      EXPORTER_DEFAULT_TEMPLATE_ID: "bbmri"
-
-
-  teiler-backend:
-    image: docker.verbis.dkfz.de/ccp/bbmri-teiler-backend:latest
-    container_name: bridgehead-teiler-backend
-    labels:
-      - "traefik.enable=true"
-      - "traefik.http.routers.teiler_backend_bbmri.rule=PathPrefix(`/bbmri-teiler-backend`)"
-      - "traefik.http.services.teiler_backend_bbmri.loadbalancer.server.port=8085"
-      - "traefik.http.routers.teiler_backend_bbmri.tls=true"
-      - "traefik.http.middlewares.teiler_backend_bbmri_strip.stripprefix.prefixes=/bbmri-teiler-backend"
-      - "traefik.http.routers.teiler_backend_bbmri.middlewares=teiler_backend_bbmri_strip"
-    environment:
-      LOG_LEVEL: "INFO"
-      APPLICATION_PORT: "8085"
-      APPLICATION_ADDRESS: "${HOST}"
-      DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
-      TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/bbmri-teiler"
-      TEILER_ORCHESTRATOR_URL: "https://${HOST}/bbmri-teiler"
-      TEILER_DASHBOARD_DE_URL: "https://${HOST}/bbmri-teiler-dashboard/de"
-      TEILER_DASHBOARD_EN_URL: "https://${HOST}/bbmri-teiler-dashboard/en"
-      HTTP_PROXY: "http://forward_proxy:3128"
-      ENABLE_MTBA: "${ENABLE_MTBA}"
-      ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
-      IDMANAGER_UPLOAD_APIKEY: "${IDMANAGER_UPLOAD_APIKEY}" # Only used to check if the ID Manager is active

bbmri/modules/teiler.md

@@ -1,19 +0,0 @@
-# Teiler
-This module orchestrates the different microfrontends of the bridgehead as a single page application.  
-
-## Teiler Orchestrator
-Single SPA component that consists on the root HTML site of the single page application and a javascript code that
-gets the information about the microfrontend calling the teiler backend and is responsible for registering them. With the
-resulting mapping, it can initialize, mount and unmount the required microfrontends on the fly. 
-
-The microfrontends run independently in different containers and can be based on different frameworks (Angular, Vue, React,...)
-This microfrontends can run as single alone but need an extension with Single-SPA (https://single-spa.js.org/docs/ecosystem).
-There are also available three templates (Angular, Vue, React) to be directly extended to be used directly in the teiler.
-
-## Teiler Dashboard
-It consists on the main dashboard and a set of embedded services.
-### Login
-user and password in ccp.local.conf
-
-## Teiler Backend
-In this component, the microfrontends are configured.

bbmri/vars

@@ -1,10 +1,3 @@
-BROKER_ID=broker-test.bbmri-test.samply.de
-BROKER_URL=https://${BROKER_ID}
-PROXY_ID=${SITE_ID}.${BROKER_ID}
-PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
-BROKER_URL_FOR_PREREQ=$BROKER_URL
-echo $PRIVATEKEYFILENAME
-
 # Makes sense for all European Biobanks
 : ${ENABLE_ERIC:=true}
 
@@ -12,8 +5,7 @@ echo $PRIVATEKEYFILENAME
 : ${ENABLE_GBN:=false}
 
 FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
-
-POSTGRES_TAG=15.6-alpine
+PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
 
 for module in $PROJECT/modules/*.sh
 do

bridgehead

@@ -69,7 +69,7 @@ loadVars() {
 		if [ "$(git rev-parse --abbrev-ref HEAD)" == "main" ]; then
 			ENVIRONMENT="production"
 		else
-			ENVIRONMENT="test" # we have acceptance environment in BBMRI ERIC and it would be more appropriate to default to that one in case the data they have in BH is real, but I'm gonna leave it as is for backward compatibility
+			ENVIRONMENT="test"
 		fi
 	fi
 	# Source the versions of the images components 
@@ -80,9 +80,6 @@ loadVars() {
 		"test")
 			source ./versions/test
 			;;
-		"acceptance")
-			source ./versions/acceptance
-			;;
 		*)
 			report_error 7 "Environment \"$ENVIRONMENT\" is unknown. Assuming production. FIX THIS!"
 			source ./versions/prod

cce/docker-compose.yml

@@ -2,7 +2,7 @@ version: "3.7"
 
 services:
   blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
+    image: docker.verbis.dkfz.de/cache/samply/blaze:0.31
     container_name: bridgehead-cce-blaze
     environment:
       BASE_URL: "http://bridgehead-cce-blaze:8080"

cce/modules/export-and-qb.curl-templates

@@ -0,0 +1,6 @@
+# Full Excel Export
+curl --location --request POST 'https://${HOST}/cce-exporter/request?query=Patient&query-format=FHIR_PATH&template-id=ccp&output-format=EXCEL' \
+--header 'x-api-key: ${EXPORT_API_KEY}'
+
+# QB
+curl --location --request POST 'https://${HOST}/cce-reporter/generate?template-id=ccp'

cce/modules/exporter-compose.yml

@@ -3,7 +3,7 @@ version: "3.7"
 services:
   exporter:
     image: docker.verbis.dkfz.de/ccp/dktk-exporter:latest
-    container_name: bridgehead-bbmri-exporter
+    container_name: bridgehead-cce-exporter
     environment:
       JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
       LOG_LEVEL: "INFO"
@@ -12,39 +12,39 @@ services:
       EXPORTER_DB_USER: "exporter"
       EXPORTER_DB_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
       EXPORTER_DB_URL: "jdbc:postgresql://exporter-db:5432/exporter"
-      HTTP_RELATIVE_PATH: "/bbmri-exporter"
+      HTTP_RELATIVE_PATH: "/cce-exporter"
       SITE: "${SITE_ID}"
       HTTP_SERVLET_REQUEST_SCHEME: "https"
       OPAL_PASSWORD: "${EXPORTER_OPAL_PASSWORD}"
     labels:
       - "traefik.enable=true"
-      - "traefik.http.routers.exporter_bbmri.rule=PathPrefix(`/bbmri-exporter`)"
-      - "traefik.http.services.exporter_bbmri.loadbalancer.server.port=8092"
-      - "traefik.http.routers.exporter_bbmri.tls=true"
-      - "traefik.http.middlewares.exporter_bbmri_strip.stripprefix.prefixes=/bbmri-exporter"
-      - "traefik.http.routers.exporter_bbmri.middlewares=exporter_bbmri_strip"
+      - "traefik.http.routers.exporter_cce.rule=PathPrefix(`/cce-exporter`)"
+      - "traefik.http.services.exporter_cce.loadbalancer.server.port=8092"
+      - "traefik.http.routers.exporter_cce.tls=true"
+      - "traefik.http.middlewares.exporter_cce_strip.stripprefix.prefixes=/cce-exporter"
+      - "traefik.http.routers.exporter_cce.middlewares=exporter_cce_strip"
     volumes:
-      - "/var/cache/bridgehead/bbmri/exporter-files:/app/exporter-files/output"
+      - "/var/cache/bridgehead/cce/exporter-files:/app/exporter-files/output"
 
   exporter-db:
     image: docker.verbis.dkfz.de/cache/postgres:${POSTGRES_TAG}
-    container_name: bridgehead-bbmri-exporter-db
+    container_name: bridgehead-cce-exporter-db
     environment:
       POSTGRES_USER: "exporter"
       POSTGRES_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
       POSTGRES_DB: "exporter"
     volumes:
       # Consider removing this volume once we find a solution to save Lens-queries to be executed in the explorer.
-      - "/var/cache/bridgehead/bbmri/exporter-db:/var/lib/postgresql/data"
+      - "/var/cache/bridgehead/cce/exporter-db:/var/lib/postgresql/data"
 
   reporter:
     image: docker.verbis.dkfz.de/ccp/dktk-reporter:latest
-    container_name: bridgehead-bbmri-reporter
+    container_name: bridgehead-cce-reporter
     environment:
       JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
       LOG_LEVEL: "INFO"
       CROSS_ORIGINS: "https://${HOST}"
-      HTTP_RELATIVE_PATH: "/bbmri-reporter"
+      HTTP_RELATIVE_PATH: "/cce-reporter"
       SITE: "${SITE_ID}"
       EXPORTER_API_KEY: "${EXPORTER_API_KEY}" # Set in exporter-setup.sh
       EXPORTER_URL: "http://exporter:8092"
@@ -52,16 +52,21 @@ services:
       HTTP_SERVLET_REQUEST_SCHEME: "https"
 
     # In this initial development state of the bridgehead, we are trying to have so many volumes as possible.
-    # However, in the first executions in the bbmri sites, this volume seems to be very important. A report is
+    # However, in the first executions in the CCE sites, this volume seems to be very important. A report is
     # a process that can take several hours, because it depends on the exporter.
     # There is a risk that the bridgehead restarts, losing the already created export.
 
     volumes:
-      - "/var/cache/bridgehead/bbmri/reporter-files:/app/reports"
+      - "/var/cache/bridgehead/cce/reporter-files:/app/reports"
     labels:
       - "traefik.enable=true"
-      - "traefik.http.routers.reporter_bbmri.rule=PathPrefix(`/bbmri-reporter`)"
-      - "traefik.http.services.reporter_bbmri.loadbalancer.server.port=8095"
-      - "traefik.http.routers.reporter_bbmri.tls=true"
-      - "traefik.http.middlewares.reporter_bbmri_strip.stripprefix.prefixes=/bbmri-reporter"
-      - "traefik.http.routers.reporter_bbmri.middlewares=reporter_bbmri_strip"
+      - "traefik.http.routers.reporter_cce.rule=PathPrefix(`/cce-reporter`)"
+      - "traefik.http.services.reporter_cce.loadbalancer.server.port=8095"
+      - "traefik.http.routers.reporter_cce.tls=true"
+      - "traefik.http.middlewares.reporter_cce_strip.stripprefix.prefixes=/cce-reporter"
+      - "traefik.http.routers.reporter_cce.middlewares=reporter_cce_strip"
+
+  focus:
+    environment:
+      EXPORTER_URL: "http://exporter:8092"
+      EXPORTER_API_KEY: "${EXPORTER_API_KEY}"

cce/modules/teiler-compose.yml

@@ -0,0 +1,89 @@
+version: "3.7"
+
+services:
+
+  teiler-orchestrator:
+    image: docker.verbis.dkfz.de/cache/samply/teiler-orchestrator:latest
+    container_name: bridgehead-teiler-orchestrator
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.teiler_orchestrator_cce.rule=PathPrefix(`/cce-teiler`)"
+      - "traefik.http.services.teiler_orchestrator_cce.loadbalancer.server.port=9000"
+      - "traefik.http.routers.teiler_orchestrator_cce.tls=true"
+      - "traefik.http.middlewares.teiler_orchestrator_cce_strip.stripprefix.prefixes=/cce-teiler"
+      - "traefik.http.routers.teiler_orchestrator_cce.middlewares=teiler_orchestrator_cce_strip"
+    environment:
+      TEILER_BACKEND_URL: "https://${HOST}/cce-teiler-backend"
+      TEILER_DASHBOARD_URL: "https://${HOST}/cce-teiler-dashboard"
+      DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
+      HTTP_RELATIVE_PATH: "/cce-teiler"
+
+  teiler-dashboard:
+    image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
+    container_name: bridgehead-teiler-dashboard
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.teiler_dashboard_cce.rule=PathPrefix(`/cce-teiler-dashboard`)"
+      - "traefik.http.services.teiler_dashboard_cce.loadbalancer.server.port=80"
+      - "traefik.http.routers.teiler_dashboard_cce.tls=true"
+      - "traefik.http.middlewares.teiler_dashboard_cce_strip.stripprefix.prefixes=/cce-teiler-dashboard"
+      - "traefik.http.routers.teiler_dashboard_cce.middlewares=teiler_dashboard_cce_strip"
+    environment:
+      DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
+      TEILER_BACKEND_URL: "https://${HOST}/cce-teiler-backend"
+      OIDC_URL: "${OIDC_URL}"
+      OIDC_REALM: "${OIDC_REALM}"
+      OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
+      OIDC_TOKEN_GROUP: "${OIDC_GROUP_CLAIM}"
+      TEILER_ADMIN_NAME: "${OPERATOR_FIRST_NAME} ${OPERATOR_LAST_NAME}"
+      TEILER_ADMIN_EMAIL: "${OPERATOR_EMAIL}"
+      TEILER_ADMIN_PHONE: "${OPERATOR_PHONE}"
+      TEILER_PROJECT: "${PROJECT}"
+      EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
+      TEILER_ORCHESTRATOR_URL: "https://${HOST}/cce-teiler"
+      TEILER_DASHBOARD_HTTP_RELATIVE_PATH: "/cce-teiler-dashboard"
+      TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/cce-teiler"
+      TEILER_USER: "${OIDC_USER_GROUP}"
+      TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
+      REPORTER_DEFAULT_TEMPLATE_ID: "cce-qb"
+      EXPORTER_DEFAULT_TEMPLATE_ID: "cce"
+
+
+  teiler-backend:
+    image: docker.verbis.dkfz.de/ccp/dktk-teiler-backend:latest
+    container_name: bridgehead-teiler-backend
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.teiler_backend_cce.rule=PathPrefix(`/cce-teiler-backend`)"
+      - "traefik.http.services.teiler_backend_cce.loadbalancer.server.port=8085"
+      - "traefik.http.routers.teiler_backend_cce.tls=true"
+      - "traefik.http.middlewares.teiler_backend_cce_strip.stripprefix.prefixes=/cce-teiler-backend"
+      - "traefik.http.routers.teiler_backend_cce.middlewares=teiler_backend_cce_strip"
+    environment:
+      LOG_LEVEL: "INFO"
+      APPLICATION_PORT: "8085"
+      APPLICATION_ADDRESS: "${HOST}"
+      DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
+      CONFIG_ENV_VAR_PATH: "/run/secrets/cce.conf"
+      TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/cce-teiler"
+      TEILER_ORCHESTRATOR_URL: "https://${HOST}/cce-teiler"
+      TEILER_DASHBOARD_DE_URL: "https://${HOST}/cce-teiler-dashboard/de"
+      TEILER_DASHBOARD_EN_URL: "https://${HOST}/cce-teiler-dashboard/en"
+      CENTRAX_URL: "${CENTRAXX_URL}"
+      HTTP_PROXY: "http://forward_proxy:3128"
+      ENABLE_MTBA: "${ENABLE_MTBA}"
+      ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
+      TEILER_APP16_BACKENDURL: "https://${HOST}/cce-exporter"
+      TEILER_APP17_BACKENDURL: "https://${HOST}/cce-exporter"
+      TEILER_APP18_BACKENDURL: "https://${HOST}/cce-exporter"
+      TEILER_APP35_BACKENDURL: "https://${HOST}/cce-exporter"
+      TEILER_APP36_BACKENDURL: "https://${HOST}/cce-exporter"
+      TEILER_APP26_BACKENDURL: "https://${HOST}/cce-reporter"
+
+
+    secrets:
+      - cce.conf
+
+secrets:
+  cce.conf:
+    file: /etc/bridgehead/cce.conf

cce/modules/teiler-setup.sh

@@ -3,7 +3,7 @@
 if [ "$ENABLE_TEILER" == true ];then
   log INFO "Teiler setup detected -- will start Teiler services."
   OVERRIDE+=" -f ./$PROJECT/modules/teiler-compose.yml"
-  TEILER_DEFAULT_LANGUAGE=EN
+  TEILER_DEFAULT_LANGUAGE=DE
   TEILER_DEFAULT_LANGUAGE_LOWER_CASE=${TEILER_DEFAULT_LANGUAGE,,}
-  # add_public_oidc_redirect_url "/ccp-teiler/*"
+  add_public_oidc_redirect_url "/cce-teiler/*"
 fi

cce/vars

@@ -7,6 +7,18 @@ SUPPORT_EMAIL=manoj.waikar@dkfz-heidelberg.de
 PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
 BROKER_URL_FOR_PREREQ=$BROKER_URL
 
+POSTGRES_TAG=15.6-alpine
+
+OIDC_USER_GROUP="CCE_$(capitalize_first_letter ${SITE_ID})"
+OIDC_ADMIN_GROUP="CCE_$(capitalize_first_letter ${SITE_ID})_Verwalter"
+OIDC_PRIVATE_CLIENT_ID=${SITE_ID}-private
+OIDC_PUBLIC_CLIENT_ID=${SITE_ID}-public
+# Use "test-realm-01" for testing
+OIDC_REALM="${OIDC_REALM:-test-realm-01}"
+OIDC_URL="https://login.verbis.dkfz.de"
+OIDC_ISSUER_URL="${OIDC_URL}/realms/${OIDC_REALM}"
+OIDC_GROUP_CLAIM="groups"
+
 for module in $PROJECT/modules/*.sh
 do
     log DEBUG "sourcing $module"

ccp/docker-compose.yml

@@ -2,7 +2,7 @@ version: "3.7"
 
 services:
   blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
+    image: docker.verbis.dkfz.de/cache/samply/blaze:0.31
     container_name: bridgehead-ccp-blaze
     environment:
       BASE_URL: "http://bridgehead-ccp-blaze:8080"

ccp/modules/blaze-secondary-compose.yml

@@ -2,7 +2,7 @@ version: "3.7"
 
 services:
   blaze-secondary:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
+    image: docker.verbis.dkfz.de/cache/samply/blaze:0.31
     container_name: bridgehead-ccp-blaze-secondary
     environment:
       BASE_URL: "http://bridgehead-ccp-blaze-secondary:8080"

ccp/modules/datashield-compose.yml

@@ -22,7 +22,7 @@ services:
 
   opal:
     container_name: bridgehead-opal
-    image: docker.verbis.dkfz.de/ccp/dktk-opal:test
+    image: docker.verbis.dkfz.de/ccp/dktk-opal:latest
     labels:
       - "traefik.enable=true"
       - "traefik.http.routers.opal_ccp.rule=PathPrefix(`/opal`)"
@@ -45,6 +45,7 @@ services:
       OPAL_PRIVATE_KEY: "/run/secrets/opal-key.pem"
       OPAL_CERTIFICATE: "/run/secrets/opal-cert.pem"
       OIDC_URL: "${OIDC_URL}"
+      OIDC_REALM: "${OIDC_REALM}"
       OIDC_CLIENT_ID: "${OIDC_PRIVATE_CLIENT_ID}"
       OIDC_CLIENT_SECRET: "${OIDC_CLIENT_SECRET}"
       OIDC_ADMIN_GROUP: "${OIDC_ADMIN_GROUP}"
@@ -140,7 +141,7 @@ services:
       --client-id="${OIDC_PRIVATE_CLIENT_ID}"
       --client-secret="${OIDC_CLIENT_SECRET}"
       --redirect-url="https://${HOST}${OAUTH2_CALLBACK}"
-      --oidc-issuer-url="${OIDC_URL}"
+      --oidc-issuer-url="${OIDC_ISSUER_URL}"
       --scope="openid email profile"
       --code-challenge-method="S256"
       --skip-provider-button=true

ccp/modules/mtba-compose.yml

@@ -23,6 +23,7 @@ services:
       OIDC_ADMIN_GROUP: "${OIDC_ADMIN_GROUP}"
       OIDC_CLIENT_ID: "${OIDC_PRIVATE_CLIENT_ID}"
       OIDC_CLIENT_SECRET: "${OIDC_CLIENT_SECRET}"
+      OIDC_REALM: "${OIDC_REALM}"
       OIDC_URL: "${OIDC_URL}"
 
     labels:

ccp/modules/teiler-compose.yml

@@ -19,8 +19,7 @@ services:
       HTTP_RELATIVE_PATH: "/ccp-teiler"
 
   teiler-dashboard:
-    #image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
-    image: samply/teiler-dashboard:develop
+    image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
     container_name: bridgehead-teiler-dashboard
     labels:
       - "traefik.enable=true"
@@ -32,8 +31,8 @@ services:
     environment:
       DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
       TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
-      TEILER_DASHBOARD_URL: "https://${HOST}/ccp-teiler-dashboard"
       OIDC_URL: "${OIDC_URL}"
+      OIDC_REALM: "${OIDC_REALM}"
       OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
       OIDC_TOKEN_GROUP: "${OIDC_GROUP_CLAIM}"
       TEILER_ADMIN_NAME: "${OPERATOR_FIRST_NAME} ${OPERATOR_LAST_NAME}"
@@ -42,6 +41,7 @@ services:
       TEILER_PROJECT: "${PROJECT}"
       EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
       TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
+      TEILER_DASHBOARD_HTTP_RELATIVE_PATH: "/ccp-teiler-dashboard"
       TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
       TEILER_USER: "${OIDC_USER_GROUP}"
       TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
@@ -64,11 +64,18 @@ services:
       APPLICATION_PORT: "8085"
       APPLICATION_ADDRESS: "${HOST}"
       DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
+      CONFIG_ENV_VAR_PATH: "/run/secrets/ccp.conf"
       TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
       TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
       TEILER_DASHBOARD_DE_URL: "https://${HOST}/ccp-teiler-dashboard/de"
       TEILER_DASHBOARD_EN_URL: "https://${HOST}/ccp-teiler-dashboard/en"
+      CENTRAX_URL: "${CENTRAXX_URL}"
       HTTP_PROXY: "http://forward_proxy:3128"
       ENABLE_MTBA: "${ENABLE_MTBA}"
       ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
-      IDMANAGER_UPLOAD_APIKEY: "${IDMANAGER_UPLOAD_APIKEY}" # Only used to check if the ID Manager is active
+    secrets:
+      - ccp.conf
+
+secrets:
+  ccp.conf:
+    file: /etc/bridgehead/ccp.conf

ccp/queries_to_cache.conf

@@ -1,3 +1,2 @@
 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
-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
-ORGANOID_DASHBOARD_PUBLIC
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

ccp/vars

@@ -12,7 +12,10 @@ OIDC_USER_GROUP="DKTK_CCP_$(capitalize_first_letter ${SITE_ID})"
 OIDC_ADMIN_GROUP="DKTK_CCP_$(capitalize_first_letter ${SITE_ID})_Verwalter"
 OIDC_PRIVATE_CLIENT_ID=${SITE_ID}-private
 OIDC_PUBLIC_CLIENT_ID=${SITE_ID}-public
-OIDC_URL="https://login.verbis.dkfz.de/realms/test-realm-01"
+# Use "test-realm-01" for testing
+OIDC_REALM="${OIDC_REALM:-master}"
+OIDC_URL="https://login.verbis.dkfz.de"
+OIDC_ISSUER_URL="${OIDC_URL}/realms/${OIDC_REALM}"
 OIDC_GROUP_CLAIM="groups"
 
 POSTGRES_TAG=15.6-alpine
@@ -26,12 +29,4 @@ done
 idManagementSetup
 mtbaSetup
 obds2fhirRestSetup
-blazeSecondarySetup
-
-for module in modules/*.sh
-do
-    log DEBUG "sourcing $module"
-    source $module
-done
-
-transfairSetup
+blazeSecondarySetup

dhki/docker-compose.yml

@@ -2,7 +2,7 @@ version: "3.7"
 
 services:
   blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
+    image: docker.verbis.dkfz.de/cache/samply/blaze:0.31
     container_name: bridgehead-dhki-blaze
     environment:
       BASE_URL: "http://bridgehead-dhki-blaze:8080"

itcc/docker-compose.yml

@@ -2,7 +2,7 @@ version: "3.7"
 
 services:
   blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
+    image: docker.verbis.dkfz.de/cache/samply/blaze:0.31
     container_name: bridgehead-itcc-blaze
     environment:
       BASE_URL: "http://bridgehead-itcc-blaze:8080"

kr/docker-compose.yml

@@ -6,7 +6,7 @@ services:
       replicas: 0 #deactivate landing page
 
   blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
+    image: docker.verbis.dkfz.de/cache/samply/blaze:0.31
     container_name: bridgehead-kr-blaze
     environment:
       BASE_URL: "http://bridgehead-kr-blaze:8080"

kr/modules/teiler-compose.yml

@@ -31,8 +31,8 @@ services:
     environment:
       DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
       TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
-      TEILER_DASHBOARD_URL: "https://${HOST}/ccp-teiler-dashboard"
       OIDC_URL: "${OIDC_URL}"
+      OIDC_REALM: "${OIDC_REALM}"
       OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
       OIDC_TOKEN_GROUP: "${OIDC_GROUP_CLAIM}"
       TEILER_ADMIN_NAME: "${OPERATOR_FIRST_NAME} ${OPERATOR_LAST_NAME}"
@@ -41,6 +41,7 @@ services:
       TEILER_PROJECT: "${PROJECT}"
       EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
       TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
+      TEILER_DASHBOARD_HTTP_RELATIVE_PATH: "/ccp-teiler-dashboard"
       TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
       TEILER_USER: "${OIDC_USER_GROUP}"
       TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
@@ -68,6 +69,7 @@ services:
       TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
       TEILER_DASHBOARD_DE_URL: "https://${HOST}/ccp-teiler-dashboard/de"
       TEILER_DASHBOARD_EN_URL: "https://${HOST}/ccp-teiler-dashboard/en"
+      CENTRAX_URL: "${CENTRAXX_URL}"
       HTTP_PROXY: "http://forward_proxy:3128"
       ENABLE_MTBA: "${ENABLE_MTBA}"
       ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"

lib/functions.sh

@@ -301,34 +301,19 @@ function sync_secrets() {
     if [[ $secret_sync_args == "" ]]; then
         return
     fi
-
-    if [ "$PROJECT" == "bbmri" ]; then
-        # If the project is BBMRI, use the BBMRI-ERIC broker and not the GBN broker
-        proxy_id=$ERIC_PROXY_ID
-        broker_url=$ERIC_BROKER_URL
-        broker_id=$ERIC_BROKER_ID
-        root_crt_file="/srv/docker/bridgehead/bbmri/modules/${ERIC_ROOT_CERT}.root.crt.pem"
-    else
-        proxy_id=$PROXY_ID
-        broker_url=$BROKER_URL
-        broker_id=$BROKER_ID
-        root_crt_file="/srv/docker/bridgehead/$PROJECT/root.crt.pem"
-    fi
-
     mkdir -p /var/cache/bridgehead/secrets/ || fail_and_report 1 "Failed to create '/var/cache/bridgehead/secrets/'. Please run sudo './bridgehead install $PROJECT' again."
     touch /var/cache/bridgehead/secrets/oidc
-    echo $PRIVATEKEYFILENAME
     docker run --rm \
         -v /var/cache/bridgehead/secrets/oidc:/usr/local/cache \
         -v $PRIVATEKEYFILENAME:/run/secrets/privkey.pem:ro \
-        -v $root_crt_file:/run/secrets/root.crt.pem:ro \
+        -v /srv/docker/bridgehead/$PROJECT/root.crt.pem:/run/secrets/root.crt.pem:ro \
         -v /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro \
         -e TLS_CA_CERTIFICATES_DIR=/conf/trusted-ca-certs \
         -e NO_PROXY=localhost,127.0.0.1 \
         -e ALL_PROXY=$HTTPS_PROXY_FULL_URL \
-        -e PROXY_ID=$proxy_id \
-        -e BROKER_URL=$broker_url \
-        -e OIDC_PROVIDER=secret-sync-central.central-secret-sync.$broker_id \
+        -e PROXY_ID=$PROXY_ID \
+        -e BROKER_URL=$BROKER_URL \
+        -e OIDC_PROVIDER=secret-sync-central.central-secret-sync.$BROKER_ID \
         -e SECRET_DEFINITIONS=$secret_sync_args \
         docker.verbis.dkfz.de/cache/samply/secret-sync-local:latest
 
@@ -349,40 +334,24 @@ function secret_sync_gitlab_token() {
             ;;
     esac
 
-    if [ "$PROJECT" == "bbmri" ]; then
-        # If the project is BBMRI, use the BBMRI-ERIC broker and not the GBN broker
-        proxy_id=$ERIC_PROXY_ID
-        broker_url=$ERIC_BROKER_URL
-        broker_id=$ERIC_BROKER_ID
-        root_crt_file="/srv/docker/bridgehead/bbmri/modules/${ERIC_ROOT_CERT}.root.crt.pem"
-    else
-        proxy_id=$PROXY_ID
-        broker_url=$BROKER_URL
-        broker_id=$BROKER_ID
-        root_crt_file="/srv/docker/bridgehead/$PROJECT/root.crt.pem"
-    fi
-
-    # Create a temporary directory for Secret Sync that is valid per boot
-    secret_sync_tempdir="/tmp/bridgehead/secret-sync.boot-$(cat /proc/sys/kernel/random/boot_id)"
-    mkdir -p $secret_sync_tempdir
-
-    # Use Secret Sync to validate the GitLab token in $secret_sync_tempdir/cache.
+    # Use Secret Sync to validate the GitLab token in /var/cache/bridgehead/secrets/gitlab_token.
     # If it is missing or expired, Secret Sync will create a new token and write it to the file.
     # The git credential helper reads the token from the file during git pull.
+    mkdir -p /var/cache/bridgehead/secrets
+    touch /var/cache/bridgehead/secrets/gitlab_token # the file has to exist to be mounted correctly in the Docker container
     log "INFO" "Running Secret Sync for the GitLab token (gitlab=$gitlab)"
     docker pull docker.verbis.dkfz.de/cache/samply/secret-sync-local:latest # make sure we have the latest image
     docker run --rm \
+        -v /var/cache/bridgehead/secrets/gitlab_token:/usr/local/cache \
         -v $PRIVATEKEYFILENAME:/run/secrets/privkey.pem:ro \
-        -v $root_crt_file:/run/secrets/root.crt.pem:ro \
+        -v /srv/docker/bridgehead/$PROJECT/root.crt.pem:/run/secrets/root.crt.pem:ro \
         -v /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro \
-        -v $secret_sync_tempdir:/secret-sync/ \
-        -e CACHE_PATH=/secret-sync/gitlab-token \
         -e TLS_CA_CERTIFICATES_DIR=/conf/trusted-ca-certs \
         -e NO_PROXY=localhost,127.0.0.1 \
         -e ALL_PROXY=$HTTPS_PROXY_FULL_URL \
-        -e PROXY_ID=$proxy_id \
-        -e BROKER_URL=$broker_url \
-        -e GITLAB_PROJECT_ACCESS_TOKEN_PROVIDER=secret-sync-central.central-secret-sync.$broker_id \
+        -e PROXY_ID=$PROXY_ID \
+        -e BROKER_URL=$BROKER_URL \
+        -e GITLAB_PROJECT_ACCESS_TOKEN_PROVIDER=secret-sync-central.central-secret-sync.$BROKER_ID \
         -e SECRET_DEFINITIONS=GitLabProjectAccessToken:BRIDGEHEAD_CONFIG_REPO_TOKEN:$gitlab \
         docker.verbis.dkfz.de/cache/samply/secret-sync-local:latest
     if [ $? -eq 0 ]; then

lib/gitlab-token-helper.sh

@@ -2,7 +2,7 @@
 
 [ "$1" = "get" ] || exit
 
-source "/tmp/bridgehead/secret-sync.boot-$(cat /proc/sys/kernel/random/boot_id)/gitlab-token"
+source /var/cache/bridgehead/secrets/gitlab_token
 
 # Any non-empty username works, only the token matters
 cat << EOF

lib/install-bridgehead.sh

@@ -41,14 +41,6 @@ if [ ! -z "$NNGM_CTS_APIKEY" ] && [ -z "$NNGM_AUTH" ]; then
   add_basic_auth_user "nngm" $generated_passwd "NNGM_AUTH" $PROJECT
 fi
 
-if [ -z "$TRANSFAIR_AUTH" ]; then
-  if [[ -n "$TTP_URL" || -n "$EXCHANGE_ID_SYSTEM" ]]; then
-    log "INFO" "Now generating basic auth user for transfair API (see adduser in bridgehead for more information). "
-    generated_passwd="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 32)"
-    add_basic_auth_user "transfair" $generated_passwd "TRANSFAIR_AUTH" $PROJECT
-  fi
-fi
-
 log "INFO" "Registering system units for bridgehead and bridgehead-update"
 cp -v \
     lib/systemd/bridgehead\@.service \

modules/ssh-tunnel-compose.yml

@@ -1,17 +0,0 @@
-version: "3.7"
-
-services:
-  ssh-tunnel:
-    image: docker.verbis.dkfz.de/cache/samply/ssh-tunnel
-    container_name: bridgehead-ccp-ssh-tunnel
-    environment:
-      SSH_TUNNEL_USERNAME: "${SSH_TUNNEL_USERNAME}"
-      SSH_TUNNEL_HOST: "${SSH_TUNNEL_HOST}"
-      SSH_TUNNEL_PORT: "${SSH_TUNNEL_PORT:-22}"
-    volumes:
-      - "/etc/bridgehead/ssh-tunnel.conf:/ssh-tunnel.conf:ro"
-    secrets:
-      - privkey
-secrets:
-  privkey:
-    file: /etc/bridgehead/pki/ssh-tunnel.priv.pem

modules/ssh-tunnel-setup.sh

@@ -1,6 +0,0 @@
-#!/bin/bash
-
-if [ -n "$ENABLE_SSH_TUNNEL" ]; then
-	log INFO "SSH Tunnel setup detected -- will start SSH Tunnel."
-	OVERRIDE+=" -f ./modules/ssh-tunnel-compose.yml"
-fi

modules/ssh-tunnel.md

@@ -1,19 +0,0 @@
-# SSH Tunnel Module
-
-This module enables SSH tunneling capabilities for the Bridgehead installation.
-The primary use case for this is to connect bridgehead components that are hosted externally due to security concerns.
-To connect the new components to the locally running bridgehead infra one is supposed to write a docker-compose.override.yml changing the urls to point to the corresponding forwarded port of the ssh-tunnel container.
-
-## Configuration Variables
-
-- `ENABLE_SSH_TUNNEL`: Required to enable the module
-- `SSH_TUNNEL_USERNAME`: Username for SSH connection
-- `SSH_TUNNEL_HOST`: Target host for SSH tunnel
-- `SSH_TUNNEL_PORT`: SSH port (defaults to 22)
-
-## Configuration Files
-
-The module requires the following files to be present:
-
-- `/etc/bridgehead/ssh-tunnel.conf`: SSH tunnel configuration file. Detailed information can be found [here](https://github.com/samply/ssh-tunnel?tab=readme-ov-file#configuration).
-- `/etc/bridgehead/pki/ssh-tunnel.priv.pem`: The SSH private key used to connect to the `SSH_TUNNEL_HOST`. **Passphrases for the key are not supported!**

modules/transfair-compose.yml

@@ -5,13 +5,8 @@ services:
     container_name: bridgehead-transfair
     environment:
       # NOTE: Those 3 variables need only to be passed if their set, otherwise transfair will complain about empty url values
-      - TTP_URL
-      - TTP_ML_API_KEY
-      - TTP_GW_SOURCE
-      - TTP_GW_EPIX_DOMAIN
-      - TTP_GW_GPAS_DOMAIN
-      - TTP_TYPE
-      - TTP_AUTH
+      - INSTITUTE_TTP_URL
+      - INSTITUTE_TTP_API_KEY
       - PROJECT_ID_SYSTEM
       - FHIR_REQUEST_URL=${FHIR_REQUEST_URL}
       - FHIR_INPUT_URL=${FHIR_INPUT_URL}
@@ -22,27 +17,11 @@ services:
       - EXCHANGE_ID_SYSTEM=${EXCHANGE_ID_SYSTEM:-SESSION_ID}
       - DATABASE_URL=sqlite://transfair/data_requests.sql?mode=rwc
       - RUST_LOG=${RUST_LOG:-info}
-      - TLS_CA_CERTIFICATES_DIR=/conf/trusted-ca-certs
-      - TLS_DISABLE=${TRANSFAIR_TLS_DISABLE:-false}
-      - NO_PROXY=${TRANSFAIR_NO_PROXIES}
-      - ALL_PROXY=http://forward_proxy:3128
     volumes:
       - /var/cache/bridgehead/${PROJECT}/transfair:/transfair
-      - /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
-    labels:
-      - "traefik.enable=true"
-      - "traefik.http.middlewares.transfair-strip.stripprefix.prefixes=/transfair"
-      - "traefik.http.routers.transfair.middlewares=transfair-strip,transfair-auth"
-      - "traefik.http.routers.transfair.rule=PathPrefix(`/transfair`)"
-      - "traefik.http.services.transfair.loadbalancer.server.port=8080"
-      - "traefik.http.routers.transfair.tls=true"
-  
-  traefik:
-    labels:
-      - "traefik.http.middlewares.transfair-auth.basicauth.users=${TRANSFAIR_AUTH}"
 
   transfair-input-blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
+    image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
     container_name: bridgehead-transfair-input-blaze
     environment:
       BASE_URL: "http://bridgehead-transfair-input-blaze:8080"
@@ -53,19 +32,12 @@ services:
     volumes:
       - "transfair-input-blaze-data:/app/data"
     profiles: ["transfair-input-blaze"]
-    labels:
-      - "traefik.enable=true"
-      - "traefik.http.routers.transfair-input-blaze.rule=PathPrefix(`/data-delivery`)"
-      - "traefik.http.middlewares.transfair-input-strip.stripprefix.prefixes=/data-delivery"
-      - "traefik.http.services.transfair-input-blaze.loadbalancer.server.port=8080"
-      - "traefik.http.routers.transfair-input-blaze.middlewares=transfair-input-strip,transfair-auth"
-      - "traefik.http.routers.transfair-input-blaze.tls=true"
 
   transfair-request-blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
-    container_name: bridgehead-transfair-request-blaze
+    image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
+    container_name: bridgehead-transfair-requests-blaze
     environment:
-      BASE_URL: "http://bridgehead-transfair-request-blaze:8080"
+      BASE_URL: "http://bridgehead-transfair-requests-blaze:8080"
       JAVA_TOOL_OPTIONS: "-Xmx1024m"
       DB_BLOCK_CACHE_SIZE: 1024
       CQL_EXPR_CACHE_SIZE: 8
@@ -73,13 +45,6 @@ services:
     volumes:
       - "transfair-request-blaze-data:/app/data"
     profiles: ["transfair-request-blaze"]
-    labels:
-      - "traefik.enable=true"
-      - "traefik.http.routers.transfair-request-blaze.rule=PathPrefix(`/data-requests`)"
-      - "traefik.http.middlewares.transfair-request-strip.stripprefix.prefixes=/data-requests"
-      - "traefik.http.services.transfair-request-blaze.loadbalancer.server.port=8080"
-      - "traefik.http.routers.transfair-request-blaze.middlewares=transfair-request-strip,transfair-auth"
-      - "traefik.http.routers.transfair-request-blaze.tls=true"
 
 volumes:
   transfair-input-blaze-data:

modules/transfair-setup.sh

@@ -1,7 +1,7 @@
 #!/bin/bash -e
 
 function transfairSetup() {
-    if [[ -n "$TTP_URL" || -n "$EXCHANGE_ID_SYSTEM" ]]; then
+    if [[ -n "$INSTITUTE_TTP_URL" || -n "$EXCHANGE_ID_SYSTEM" ]]; then
         echo "Starting transfair."
 	    OVERRIDE+=" -f ./modules/transfair-compose.yml"
 	    if [ -n "$FHIR_INPUT_URL" ]; then
@@ -15,21 +15,8 @@ function transfairSetup() {
 		    log INFO "TransFAIR request fhir store set to external $FHIR_REQUEST_URL"
 	    else
 		    log INFO "TransFAIR request fhir store not set writing to internal blaze"
-		    FHIR_REQUEST_URL="http://transfair-request-blaze:8080"
+		    FHIR_REQUEST_URL="http://transfair-requests-blaze:8080"
 		    OVERRIDE+=" --profile transfair-request-blaze"
 	    fi
-	    if [ -n "$TTP_GW_SOURCE" ]; then
-		    log INFO "TransFAIR configured with greifswald as ttp"
-		    TTP_TYPE="greifswald"
-	    elif [ -n "$TTP_ML_API_KEY" ]; then
-		    log INFO "TransFAIR configured with mainzelliste as ttp"
-		    TTP_TYPE="mainzelliste"
-        else
-		    log INFO "TransFAIR configured without ttp"
-	    fi
-        TRANSFAIR_NO_PROXIES="transfair-input-blaze,blaze,transfair-requests-blaze"
-        if [ -n "${TRANSFAIR_NO_PROXY}" ]; then
-            TRANSFAIR_NO_PROXIES+=",${TRANSFAIR_NO_PROXY}"
-        fi
     fi
 }

versions/acceptance

@@ -1,3 +0,0 @@
-FOCUS_TAG=develop
-BEAM_TAG=develop
-BLAZE_TAG=main

versions/prod

@@ -1,3 +1,2 @@
 FOCUS_TAG=main
-BEAM_TAG=main
-BLAZE_TAG=0.32
+BEAM_TAG=main

versions/test

@@ -1,3 +1,2 @@
 FOCUS_TAG=develop
-BEAM_TAG=develop
-BLAZE_TAG=main
+BEAM_TAG=develop