bridgehead/ccp/modules/ovis-compose.yml

version: "3.7"

services:
  mongo:
    image: mongo:${MONGO_VER:-latest}
    container_name: bridgehead-ccp-ovis-mongo
    restart: always
    command: mongod
    volumes:
      - /var/cache/bridgehead/ccp/ovis/mongo/init/init.js:/docker-entrypoint-initdb.d/init.js:ro

  ovis-backend-data-preprocessing:
    image: docker.verbis.dkfz.de/ovis/ovis-backend-preprocessor:latest
    container_name: bridgehead-ccp-ovis-preprocessing
    restart: on-failure
    user: root
    working_dir: /app
    environment:
      APOLLO_PORT: ${APOLLO_PORT:-4001}
      CREDOS_PORT: ${CREDOS_PORT:-4000}
      HTTP_PROXY: ${OVIS_HTTP_PROXY:-}
      HTTPS_PROXY: ${OVIS_HTTPS_PROXY:-}
      NO_PROXY: ${OVIS_NO_PROXY:-}
      http_proxy: ${OVIS_HTTP_PROXY:-}
      https_proxy: ${OVIS_HTTPS_PROXY:-}
      no_proxy: ${OVIS_NO_PROXY:-}
      CORS_ORIGIN: ${OVIS_CORS_ORIGIN:-*}
      DB: ${DB:-onc_test}
      ADRESS: mongodb://mongo:27017
      MONGO_VER: ${MONGO_VER:-latest}
      OVIS_PREPROC_DECEASED_KEYWORDS: ${OVIS_PREPROC_DECEASED_KEYWORDS:-}
      OVIS_PREPROC_REZIDIV_PREFIXES: ${OVIS_PREPROC_REZIDIV_PREFIXES:-}
      OVIS_PREPROC_REZIDIV_CANONICAL: ${OVIS_PREPROC_REZIDIV_CANONICAL:-}
      OVIS_PREPROC_REZIDIV_LYMPH_STATES: ${OVIS_PREPROC_REZIDIV_LYMPH_STATES:-}
      OVIS_PREPROC_PROGRESS_LABELS: ${OVIS_PREPROC_PROGRESS_LABELS:-}
      OVIS_PREPROC_COMPLETE_REMISSION_LABELS: ${OVIS_PREPROC_COMPLETE_REMISSION_LABELS:-}
      OVIS_PREPROC_RCLASS_SUCCESS: ${OVIS_PREPROC_RCLASS_SUCCESS:-}
      OVIS_PREPROC_LOCAL_RSTATE_SUCCESS: ${OVIS_PREPROC_LOCAL_RSTATE_SUCCESS:-}
      OVIS_PREPROC_METASTASIS_PREFIXES: ${OVIS_PREPROC_METASTASIS_PREFIXES:-}
      OVIS_PREPROC_METASTASIS_SPREAD_VALUES: ${OVIS_PREPROC_METASTASIS_SPREAD_VALUES:-}
      OVIS_PREPROC_METASTASIS_STRAT_SYNCHRON: ${OVIS_PREPROC_METASTASIS_STRAT_SYNCHRON:-}
      OVIS_PREPROC_METASTASIS_STRAT_NONE: ${OVIS_PREPROC_METASTASIS_STRAT_NONE:-}
      OVIS_PREPROC_NULL_STUDY_PHASES: ${OVIS_PREPROC_NULL_STUDY_PHASES:-}
      OVIS_PREPROC_PREV_THERAPY_SURGERY: ${OVIS_PREPROC_PREV_THERAPY_SURGERY:-}
      OVIS_PREPROC_PREV_THERAPY_SYSTEMIC: ${OVIS_PREPROC_PREV_THERAPY_SYSTEMIC:-}
      OVIS_PREPROC_PREV_THERAPY_RADIATION: ${OVIS_PREPROC_PREV_THERAPY_RADIATION:-}
      OVIS_PREPROC_PREV_CONSULTATION_NUTRITION: ${OVIS_PREPROC_PREV_CONSULTATION_NUTRITION:-}
      OVIS_PREPROC_PREV_CONSULTATION_SOCIAL: ${OVIS_PREPROC_PREV_CONSULTATION_SOCIAL:-}
      OVIS_PREPROC_PREV_CONSULTATION_PSYCHO: ${OVIS_PREPROC_PREV_CONSULTATION_PSYCHO:-}
      OVIS_PREPROC_PREV_CONSULTATION_GENETIC: ${OVIS_PREPROC_PREV_CONSULTATION_GENETIC:-}
      OVIS_PREPROC_TUMORBOARD_PATTERN_PRAE: ${OVIS_PREPROC_TUMORBOARD_PATTERN_PRAE:-}
      OVIS_PREPROC_TUMORBOARD_PATTERN_POST: ${OVIS_PREPROC_TUMORBOARD_PATTERN_POST:-}
      OVIS_PREPROC_TUMORBOARD_PATTERN_MTB: ${OVIS_PREPROC_TUMORBOARD_PATTERN_MTB:-}
      OVIS_PREPROC_ECOG_PREFIX: ${OVIS_PREPROC_ECOG_PREFIX:-}
      OVIS_PREPROC_DISTRESS_TYPE: ${OVIS_PREPROC_DISTRESS_TYPE:-}
      OVIS_PREPROC_DISTRESS_POSITIVE_VALUES: ${OVIS_PREPROC_DISTRESS_POSITIVE_VALUES:-}
    depends_on:
      - mongo
    volumes:
      - /var/cache/bridgehead/ccp/ovis/shared_data:/app/generated
    healthcheck:
      test: ["CMD-SHELL", "node -e \"require('http').get('http://localhost:9000/health', res => process.exit(res.statusCode===200?0:1)).on('error', () => process.exit(1));\""]
      interval: 10s
      timeout: 5s
      retries: 6
      start_period: 5s
    command: ["node", "./Preprocessing/catalogue-service.mjs"]

  ovis-backend-data-import:
    image: docker.verbis.dkfz.de/ovis/ovis-backend-data-import-${OVIS_IMPORT_MODE:-demo}:latest
    container_name: bridgehead-ccp-ovis-import
    restart: on-failure
    depends_on:
      ovis-backend-data-preprocessing:
        condition: service_healthy
    environment:
      # CCP mode: FHIR source configuration (ignored by DEMO image)
      FHIR_SERVER_URL: ${FHIR_SERVER_URL:-http://bridgehead-ccp-blaze:8080/fhir}
      FHIR_USERNAME: ${FHIR_USERNAME:-}
      FHIR_PASSWORD: ${FHIR_PASSWORD:-}
      ICD10_FILTER: ${ICD10_FILTER:-}
      # Required for both CCP and DEMO: preprocessor upload endpoint
      OVIS_PREPROCESSOR_URL: ${OVIS_PREPROCESSOR_URL:-http://ovis-backend-data-preprocessing:9000/omock}
      # Proxy configuration
      HTTP_PROXY: ${OVIS_HTTP_PROXY:-}
      HTTPS_PROXY: ${OVIS_HTTPS_PROXY:-}
      NO_PROXY: ${OVIS_NO_PROXY:-}
      http_proxy: ${OVIS_HTTP_PROXY:-}
      https_proxy: ${OVIS_HTTPS_PROXY:-}
      no_proxy: ${OVIS_NO_PROXY:-}
    volumes:
      - /var/cache/bridgehead/ccp/ovis/shared_data:/shared

  backend:
    image: docker.verbis.dkfz.de/ovis/adt-mon-gql-backend:latest
    container_name: bridgehead-ccp-ovis-backend
    restart: always
    user: root
    working_dir: /app
    environment:
      APOLLO_PORT: ${APOLLO_PORT:-4001}
      CREDOS_PORT: ${CREDOS_PORT:-4000}
      CORS_ORIGIN: ${OVIS_CORS_ORIGIN:-*}
      DB: ${DB:-onc_test}
      ADRESS: mongodb://mongo:27017
    depends_on:
      - mongo
      - ovis-backend-data-preprocessing
      - ovis-backend-data-import
    healthcheck:
      test: ["CMD", "curl", "-f", "http://localhost:${APOLLO_PORT:-4001}/health"]
      interval: 5s
      timeout: 3s
      retries: 5
      start_period: 10s
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.ovis-backend.rule=Host(`${HOST:-localhost}`) && PathPrefix(`/graphql`)"
      - "traefik.http.routers.ovis-backend.tls=true"
      - "traefik.http.routers.ovis-backend.middlewares=${OVIS_AUTH_MIDDLEWARE:-traefik-forward-auth}"
      - "traefik.http.routers.ovis-backend-ccp.rule=PathPrefix(`/ccp-ovis/graphql`)"
      - "traefik.http.routers.ovis-backend-ccp.tls=true"
      - "traefik.http.middlewares.ovis-backend-ccp-strip.stripprefix.prefixes=/ccp-ovis"
      - "traefik.http.routers.ovis-backend-ccp.middlewares=ovis-backend-ccp-strip,${OVIS_AUTH_MIDDLEWARE:-traefik-forward-auth}"
      - "traefik.http.services.ovis-backend.loadbalancer.server.port=${APOLLO_PORT:-4001}"

  frontend:
    image: docker.verbis.dkfz.de/ovis/adt-mon-gql-frontend:latest
    container_name: bridgehead-ccp-ovis-frontend
    restart: always
    environment:
      PUBLIC_GRAPHQL_URL: https://${HOST:-localhost}/ccp-ovis/graphql
      PUBLIC_LOGIN_ENABLED: ${PUBLIC_LOGIN_ENABLED:-false}
      PUBLIC_OVIS_IMPORT: ${OVIS_IMPORT_MODE:-demo}
      OVIS_CATALOGUE_UPSTREAM_URL: ${OVIS_CATALOGUE_UPSTREAM_URL:-http://ovis-backend-data-preprocessing:9000/catalogue}
      EXPRESS_AUTH_URL: ${EXPRESS_AUTH_URL:-http://express-auth:5000}
      EXPRESS_AUTH_USERNAME: ${EXPRESS_AUTH_USERNAME:-admin}
      EXPRESS_AUTH_PASSWORD: ${EXPRESS_AUTH_PASSWORD:-admin}
      HTTP_PROXY: ${OVIS_HTTP_PROXY:-}
      HTTPS_PROXY: ${OVIS_HTTPS_PROXY:-}
      NO_PROXY: ${OVIS_NO_PROXY:-}
      http_proxy: ${OVIS_HTTP_PROXY:-}
      https_proxy: ${OVIS_HTTPS_PROXY:-}
      no_proxy: ${OVIS_NO_PROXY:-}
    depends_on:
      backend:
        condition: service_healthy
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.ovis-frontend.tls=true"
      - "traefik.http.routers.ovis-frontend.rule=Host(`${HOST:-localhost}`)"
      - "traefik.http.routers.ovis-frontend.middlewares=${OVIS_AUTH_MIDDLEWARE:-traefik-forward-auth}"
      - "traefik.http.routers.ovis-frontend-ccp.rule=PathPrefix(`/ccp-ovis`)"
      - "traefik.http.routers.ovis-frontend-ccp.tls=true"
      - "traefik.http.middlewares.ovis-frontend-ccp-strip.stripprefix.prefixes=/ccp-ovis"
      - "traefik.http.routers.ovis-frontend-ccp.middlewares=ovis-frontend-ccp-strip,${OVIS_AUTH_MIDDLEWARE:-traefik-forward-auth}"
      - "traefik.http.services.ovis-frontend.loadbalancer.server.port=5173"