beautiful config
This commit is contained in:
p.delpy@dkfz-heidelberg.de
parent
82f6f886db
commit
969469db04
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@ -1,19 +1,17 @@
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#!/bin/bash
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function exliquidSetup() {
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case ${SITE_ID} in
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berlin|dresden|essen|frankfurt|freiburg|luebeck|mainz|muenchen-lmu|muenchen-tu|mannheim|tuebingen)
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EXLIQUID=1
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;;
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dktk-test)
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EXLIQUID=1
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;;
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*)
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EXLIQUID=0
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;;
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esac
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if [[ $EXLIQUID -eq 1 ]]; then
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log INFO "EXLIQUID setup detected -- will start Report-Hub."
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OVERRIDE+=" -f ./$PROJECT/modules/exliquid-compose.yml"
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fi
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}
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case ${SITE_ID} in
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berlin|dresden|essen|frankfurt|freiburg|luebeck|mainz|muenchen-lmu|muenchen-tu|mannheim|tuebingen)
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EXLIQUID=1
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;;
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dktk-test)
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EXLIQUID=1
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;;
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*)
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EXLIQUID=0
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;;
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esac
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if [[ $EXLIQUID -eq 1 ]]; then
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log INFO "EXLIQUID setup detected -- will start Report-Hub."
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OVERRIDE+=" -f ./$PROJECT/modules/exliquid-compose.yml"
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fi
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@ -1,10 +1,8 @@
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#!/bin/bash
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function exporterSetup() {
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if [ -n "$ENABLE_EXPORTER" ];then
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log INFO "Exporter setup detected -- will start Exporter service."
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OVERRIDE+=" -f ./$PROJECT/modules/exporter-compose.yml"
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fi
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# TODO: Generate password in another way so that not all passwords are the same?
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EXPORTER_DB_PASSWORD="$(echo \"This is a salt string to generate one consistent password. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
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}
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if [ -n "$ENABLE_EXPORTER" ];then
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log INFO "Exporter setup detected -- will start Exporter service."
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OVERRIDE+=" -f ./$PROJECT/modules/exporter-compose.yml"
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fi
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# TODO: Generate password in another way so that not all passwords are the same?
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EXPORTER_DB_PASSWORD="$(echo \"This is a salt string to generate one consistent password. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
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@ -1,21 +1,5 @@
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#!/bin/bash
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function idManagementSetup() {
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if [ -n "$IDMANAGER_UPLOAD_APIKEY" ]; then
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log INFO "id-management setup detected -- will start id-management (mainzelliste & magicpl)."
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OVERRIDE+=" -f ./$PROJECT/modules/id-management-compose.yml"
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# Auto Generate local Passwords
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PATIENTLIST_POSTGRES_PASSWORD="$(echo \"id-management-module-db-password-salt\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
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IDMANAGER_LOCAL_PATIENTLIST_APIKEY="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
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# Transform Seeds Configuration to pass it to the Mainzelliste Container
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PATIENTLIST_SEEDS_TRANSFORMED="$(declare -p PATIENTLIST_SEEDS | tr -d '\"' | sed 's/\[/\[\"/g' | sed 's/\]/\"\]/g')"
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# Ensure old ids are working !!!
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export IDMANAGEMENT_FRIENDLY_ID=$(legacyIdMapping "$SITE_ID")
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fi
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}
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# Transform into single string array, e.g. 'dktk-test' to 'dktk test'
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# Usage: transformToSingleStringArray 'dktk-test' -> 'dktk test'
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@ -50,3 +34,18 @@ function legacyIdMapping() {
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normalized_string=$(applySpecialCases "$uppercase_string");
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echo "$normalized_string" | tr -d ' '
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}
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if [ -n "$IDMANAGER_UPLOAD_APIKEY" ]; then
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log INFO "id-management setup detected -- will start id-management (mainzelliste & magicpl)."
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OVERRIDE+=" -f ./$PROJECT/modules/id-management-compose.yml"
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# Auto Generate local Passwords
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PATIENTLIST_POSTGRES_PASSWORD="$(echo \"id-management-module-db-password-salt\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
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IDMANAGER_LOCAL_PATIENTLIST_APIKEY="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
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# Transform Seeds Configuration to pass it to the Mainzelliste Container
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PATIENTLIST_SEEDS_TRANSFORMED="$(declare -p PATIENTLIST_SEEDS | tr -d '\"' | sed 's/\[/\[\"/g' | sed 's/\]/\"\]/g')"
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# Ensure old ids are working !!!
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export IDMANAGEMENT_FRIENDLY_ID=$(legacyIdMapping "$SITE_ID")
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fi
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@ -1,13 +1,10 @@
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#!/bin/bash
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function mtbaSetup() {
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# TODO: Check if ID-Management Module is activated!
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if [ -n "$ENABLE_MTBA" ];then
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log INFO "MTBA setup detected -- will start MTBA Service and CBioPortal."
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if [ ! -n "$IDMANAGER_UPLOAD_APIKEY" ]; then
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log ERROR "Detected MTBA Module configuration but ID-Management Module seems not to be configured!"
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exit 1;
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fi
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OVERRIDE+=" -f ./$PROJECT/modules/mtba-compose.yml"
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fi
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}
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if [ -n "$ENABLE_MTBA" ];then
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log INFO "MTBA setup detected -- will start MTBA Service and CBioPortal."
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if [ ! -n "$IDMANAGER_UPLOAD_APIKEY" ]; then
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log ERROR "Detected MTBA Module configuration but ID-Management Module seems not to be configured!"
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exit 1;
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fi
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OVERRIDE+=" -f ./$PROJECT/modules/mtba-compose.yml"
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fi
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@ -2,7 +2,7 @@ version: "3.7"
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services:
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connector:
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container_name: bridgehead-connector
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container_name: bridgehead-nngm-connector
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image: docker.verbis.dkfz.de/ccp/connector:bk2
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environment:
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POSTGRES_PASSWORD: ${CONNECTOR_POSTGRES_PASSWORD}
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@ -19,7 +19,7 @@ services:
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connector_db:
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image: postgres:9.5-alpine
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container_name: bridgehead-ccp-connector-db
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container_name: bridgehead-nngm-connector-db
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volumes:
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- "connector_db_data:/var/lib/postgresql/data"
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environment:
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@ -1,9 +1,7 @@
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#!/bin/bash
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function nngmSetup() {
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if [ -n "$NNGM_CTS_APIKEY" ]; then
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log INFO "nNGM setup detected -- will start nNGM Connector."
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OVERRIDE+=" -f ./$PROJECT/modules/nngm-compose.yml"
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fi
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CONNECTOR_POSTGRES_PASSWORD="$(echo \"This is a salt string to generate one consistent password. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
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}
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if [ -n "$NNGM_CTS_APIKEY" ]; then
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log INFO "nNGM setup detected -- will start nNGM Connector."
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OVERRIDE+=" -f ./$PROJECT/modules/nngm-compose.yml"
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fi
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CONNECTOR_POSTGRES_PASSWORD="$(echo \"This is a salt string to generate one consistent password. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
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@ -1,9 +1,7 @@
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#!/bin/bash
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function teilerUiSetup() {
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if [ -n "$ENABLE_TEILER" ];then
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log INFO "Teiler-UI setup detected -- will start Teiler-UI services."
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OVERRIDE+=" -f ./$PROJECT/modules/teiler-ui-compose.yml"
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fi
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KEYCLOAK_DB_PASSWORD="$(echo \"This is a salt string to generate one consistent password. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
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}
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if [ "$ENABLE_TEILER" == true ];then
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log INFO "Teiler-UI setup detected -- will start Teiler-UI services."
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OVERRIDE+=" -f ./$PROJECT/modules/teiler-ui-compose.yml"
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fi
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KEYCLOAK_DB_PASSWORD="$(echo \"This is a salt string to generate one consistent password. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
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19
ccp/vars
19
ccp/vars
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@ -8,17 +8,8 @@ REPORTHUB_BEAM_SECRET_LONG="ApiKey report-hub.${PROXY_ID} ${REPORTHUB_BEAM_SECRE
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SUPPORT_EMAIL=support-ccp@dkfz-heidelberg.de
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PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
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# This will load id-management setup. Effective only if id-management configuration is defined.
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source $PROJECT/modules/id-management-setup.sh
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idManagementSetup
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# This will load nngm setup. Effective only if nngm configuration is defined.
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source $PROJECT/modules/nngm-setup.sh
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nngmSetup
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source $PROJECT/modules/exliquid-setup.sh
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exliquidSetup
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source $PROJECT/modules/mtba-setup.sh
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mtbaSetup
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source $PROJECT/modules/exporter-setup.sh
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exporterSetup
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source $PROJECT/modules/teiler-ui-setup.sh
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teilerUiSetup
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for module in $PROJECT/modules/*.sh
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do
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log INFO "sourcing $module"
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source $module
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done
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