ec2c61b308
Martin's change
2025-05-09 09:23:20 +02:00
0cdd5f371b
Use temp directory for secret sync cache
2025-05-09 09:21:40 +02:00
cd38957dd7
Merge pull request #289 from samply/develop
...
Merge develop into main
2025-04-15 10:17:11 +02:00
2ddd535794
feat: ssh tunnel ( #292 )
...
* Added ccp module for a ssh tunnel
Usage details under https://github.com/samply/ssh-tunnel
* chore: update ssh-tunnel image to harbor
* feat: ssh tunnel support diffrent port
* chore: fix indentation
* chore: move to top level modules
* docs: add ssh-tunnel docs
---------
Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de >
2025-04-14 10:45:15 +02:00
973547c322
chore(transfair): add new gw option ( #291 )
2025-04-11 08:37:31 +02:00
6b649c9233
feat: expose transfair via traefik ( #290 )
...
Note: Requires a bridgehead install to generate the basic auth user
2025-04-09 13:19:52 +02:00
3144ee5214
Fix GitLab token syncing for BBMRI
2025-03-31 11:08:59 +02:00
68804dc71b
feat: add transfair setup to ccp
2025-03-26 13:11:43 +01:00
e5aebfe382
chore!: update transfair config
2025-03-26 13:11:43 +01:00
4ef585bfc5
Merge pull request #281 from samply/develop
...
Merge develop into main
2025-03-17 10:02:58 +01:00
6f3aba1eaa
feat: support self-signed cert on ttp ( #283 )
2025-03-12 15:45:55 +01:00
82ced89b33
chore: unify blaze versioning and upgrade to 0.32 ( #277 )
2025-03-12 12:52:00 +01:00
5d94bac0e2
Mount queries_to_cache.conf readonly ( #282 )
2025-03-10 16:03:05 +01:00
83555540f5
chore: update central Secret Sync proxy ID ( #280 )
2025-03-10 12:08:19 +01:00
e396e00178
Fix/ccp cql cache ( #279 )
...
* fix: adapt focus caching to new cql and add focus caching for cce and itcc
---------
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2025-03-07 12:20:38 +01:00
ecb29830e4
Send the origin of /etc/bridgehead repo to Secret Sync
...
This is to anticipate an upcoming change in Secret Sync that will allow it to support multiple GitLab servers, e.g. verbis GitLab and BBMRI GitLab.
2025-03-05 11:04:22 +01:00
98121c17e8
Make Codeowners Rule apply to all Files in Repo
2025-02-20 17:28:38 +01:00
e38511e118
Add Codeowners File
2025-02-20 17:20:54 +01:00
6ca67ca082
Merge pull request #270 from samply/develop
2025-02-20 15:46:40 +01:00
8334fac84d
fix: use correct obds2fhir-rest image
...
---------
Co-authored-by: Pierre Delpy <p.delpy@dkfz-heidelberg.de >
2025-02-20 13:48:10 +01:00
8000356b57
docs: explicitly clone main branch ( #269 )
2025-02-07 11:21:43 +01:00
74d8e68d96
Merge pull request #258 from samply/feat/routine-connector
...
feat: transFAIR
2025-02-07 10:39:54 +01:00
c568a56651
refactor: set transfair log to info
2025-02-07 10:30:43 +01:00
8384143387
fix: make transfair reach the internal blaze stores
2025-02-07 09:17:17 +01:00
8fe73a8123
fix: support mode without ttp
2025-02-07 09:17:07 +01:00
bca63e82a9
fix: don't use return in transfairSetup
...
For some reason the return not only exits transfairSetup, but also the
bridgehead script
2025-02-06 15:43:37 +01:00
721627a78f
feat: migrate to new dnpm:dip node ( #251 )
...
* feat: migrate to new dnpm:dip node
* hardcode dnpm connector type to broker
* use `SITE_NAME` for dnpm `LOCAL_SITE`
* host central targets in git
* dnpm: add goettingen to central targets
* dnpm: add uksh to central targets
* dnpm: replace named volumes with fs volumes
* chore: change dnpm images
* chore: pin mysql
* dnpm: Secure endpoints for ETL and p2p communications (#254 )
* fix authup redirect (#262 )
When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP.
Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.
* Whitespace formatting
---------
Co-authored-by: Niklas <niklas@ytvwld.de >
Co-authored-by: Niklas Reimer <niklas@backbord.net >
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com >
2025-02-05 13:24:28 +01:00
e08ff92401
Merge pull request #268 from samply/main
...
Main backport
2025-02-05 08:45:35 +01:00
e3553370b6
feat: unify version handeling ( #265 )
2025-01-29 13:17:59 +01:00
1ad73d8f82
fix: properly load oidc secrets ( #267 )
2025-01-29 10:59:27 +01:00
0b6fa439ba
Merge pull request #266 from samply/fix/docker-hub-link
...
Fixed Docker Hub URL list link
2025-01-29 09:52:26 +01:00
615990b92a
Use secret-sync for gitpassword ( #257 )
...
---------
Co-authored-by: Tim Schumacher <tim@tschumacher.net >
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
Co-authored-by: Tim Schumacher <tim.schumacher@dkfz-heidelberg.de >
2025-01-28 14:53:49 +01:00
db950d6d87
Fixed Docker Hub URL list link
2025-01-28 08:59:57 +00:00
6a71da3dd1
docs: documentation for changing your configuration repository access token ( #256 )
2025-01-27 10:49:10 +01:00
138a1fa5f1
fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME ( #259 )
2025-01-27 10:49:10 +01:00
39a87bcf61
Update: Blaze to version 0.31 ( #260 )
2025-01-27 10:49:10 +01:00
655d0d24c7
fix: remove restart: always in compose files ( #261 )
2025-01-27 10:49:10 +01:00
fa0d9fb8b4
restrict additional blaze memory usage
2025-01-24 09:23:08 +00:00
139fcecabe
redo transfair setup
2025-01-23 13:27:42 +00:00
2058a7a5c9
update image url
2025-01-23 12:06:43 +00:00
47364f999e
wip: routine connector
2025-01-21 13:55:08 +00:00
910289079b
docs: documentation for changing your configuration repository access token ( #256 )
2025-01-21 09:35:25 +01:00
1003cd73cf
fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME ( #259 )
2025-01-21 09:30:20 +01:00
3d1105b97c
Update: Blaze to version 0.31 ( #260 )
2025-01-21 09:28:47 +01:00
5c28e704d2
fix: remove restart: always in compose files ( #261 )
2025-01-21 09:27:27 +01:00
df1ec21848
Merge pull request #246 from samply/develop
...
set environment variables needed for the focus blaze-and-sql endpoint to work when fhir2sql is enabled
2024-12-11 10:53:27 +01:00
e3510363ad
fix: remove credentials from git remote, if update fails ( #253 )
...
Signed-off-by: Patrick Skowronek <patrick.skowronek@dkfz-heidelberg.de >
2024-12-10 17:18:07 +01:00
45aefd24e5
renamed exporter API key to EXPORTER_API_KEY ( #252 )
2024-12-06 11:27:38 +01:00
122ff16bb1
fix: use verbis cache image instead of docker-hub ( #250 )
2024-11-12 09:58:17 +01:00
967e45624e
Add exporter configuration to focus ( #249 )
2024-11-05 15:46:00 +01:00
