DKFZ TransFAIR stores the project pseudonym the UMM site assigns to a linked
patient in the DKFZ TTP. It needs that TTP's URL and an API key that may
edit patients: DKFZ_TTP_URL and DKFZ_TTP_ML_API_KEY, both required, and
DKFZ_PROJECT_ID_SYSTEM (default dhkiComId). Plain TTP_URL is not used, as
it would also start the DIC TransFAIR.
dhki/vars already defaults TRANSFAIR_TAG to main, but the UMM site kept
running :latest (1.1.x), which lacks the DHKI workflow changes.
Projects that do not set TRANSFAIR_TAG still get :latest.
DKFZ TransFAIR fetches the DIC response Bundle (identifier DATAREQUEST_ID)
through umm-blaze, but that Bundle only exists in transfair-input-blaze.
The output store holds the unpacked resources with project pseudonyms.
* sites moved to etc itcc.comf
* mainzelliste test
* volume
* fix image
* db name chaged
* ingest component test
* clean up
* maizelliste env db
* test server ip
* beam sockets
* teswt socket and task
* secure db and ml
* refactor and patient endpoints
* partner id
* new refactor and encription key generation
* db deleted
* keyset to var/
* feat: add Data Quality Agent configuration and setup
* fix: correct environment variable name in Data Quality Agent configuration
* feat: update Data Quality Agent configuration and setup instructions
* feat: update Data Quality Agent setup and documentation
* feat: add volume configuration for agent data in Data Quality Agent compose file
* feat: update volume configuration for Data Quality Agent in compose file
* Update README.md
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
---------
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
Right now, Directory sync will only be activated if a username has been
specified. It also needs to run if a login token has been specified,
hence the change in this commit.
The Directory team have requested that we allow token login to the
Directory, where a user uses LSAAI credentials to obtain a token from
the Directory, and then uses this to authenticate Directory sync. This
has been implemented via an environment variable, in an analogous way to
the already existing username/password method.
The default start time for the Directory sync has been shifted to 22:30,
to prevent conflicts with the Bridgehead auto-update.
Relevant changes have been made to the documentation.
Co-authored-by: Torben Brenner <76154651+torbrenner@users.noreply.github.com>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
Threated
Skiba, Jan
Martin Lablans
Torben Brenner
tm16-medma
Jan
DavidCroftDKFZ
Tim Schumacher
Enola Knezevic
Tobias Kussel
afigueroaDkfz
Pierre Delpy
Martin Jurk
Radovan Tomášik
Patrick Skowronek
Manoj Waikar
Manoj Waikar
Niklas Reimer
djuarezgf