DavidCroftDKFZ
2fbe52340a
Directory sync: inherit host timezone
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Directory sync needs to be able to launch at specific times of day, and in order to do this in a predictable way, the timezone used inside the Docker container should be the same as the host. To do this, two files need to be mounted from the host. One file contains information about the time zone, the other file contains the file zone name.
2025-10-28 15:18:40 +01:00
djuarezgf
66a1bd1122
docs: add initial documentation for Samply.Exporter and Samply.Teiler ( #350 )
2025-10-20 11:16:41 +02:00
Tim Schumacher
85957b3d48
Update focus tags: no project specific images anymore
2025-10-16 13:39:58 +02:00
Jan
b31f2aff7d
fix: don't run secret sync for minimal ( #349 )
2025-10-15 10:45:42 +02:00
Jan
eab7700404
feat: add bridgehead check command ( #342 )
2025-09-30 11:47:51 +02:00
Jan
00b10f3ae6
fix: only pass CQL_PROJECTS_ENABLED to focus if set ( #344 )
2025-09-30 11:39:40 +02:00
Jan
d1f5820d0f
feat: allow cql queries for exliquid ( #343 )
2025-09-30 11:01:14 +02:00
Tim Schumacher
8a35785a24
feat: add scout module ( #339 )
2025-09-02 13:23:34 +02:00
Jan
e0754853d8
feat(dnpm): change to new api-gateway image ( #337 )
2025-08-19 16:35:52 +02:00
Jan
4407a87644
chore: add more options to transfair ( #325 )
2025-08-19 16:32:41 +02:00
Jan
d0851d80a0
fix: adapt to transfair cli changes ( #319 )
2025-08-19 15:48:05 +02:00
djuarezgf
ada3226044
Replace hardcoded image: ...:develop references with version variables ( #335 )
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* added: Teiler Dashboard Version
* added: MTBA Version
* added: beam proxy tag version
2025-07-30 11:21:10 +02:00
Paul-Christian Volkmer
a2e7330cee
docs: Add ghcr.io to URL list ( #321 )
2025-07-25 10:58:56 +02:00
Jan
9c8d0ee8f5
fix(dnpm): fix env subsitution ( #333 )
2025-07-25 10:58:07 +02:00
djuarezgf
fcad7104f0
mtba: fallback to keycloak test server pending migration
2025-07-23 09:53:14 +02:00
djuarezgf
7e13e251f8
feat: migrate PSP to Authentik ( #329 )
2025-07-22 11:34:49 +02:00
Jan
2cfdc3ac3e
feat(dnpm): allow setting custom dnpm image tag ( #326 )
2025-07-07 15:36:14 +02:00
djuarezgf
43b24c2a62
Fixed: Authentik URL for Opal ( #328 )
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* Fixed: Authentik URL for Opal
* Removed: Unnecessary OIDC config in CCE and BBMRI
* KR with basic auth instead of OIDC
2025-07-07 15:35:54 +02:00
djuarezgf
8414604257
feat: migrate OIDC Configuration from Keycloak to Authentik ( #327 )
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* Change: Authentik instead of Keycloak in CCP
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
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Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2025-07-04 14:26:19 +02:00
Jan
4c6f9e0f13
feat: remove local rstudio ( #322 )
2025-06-27 10:55:53 +02:00
djuarezgf
a1cdc2659d
CCE Teiler and Export ( #323 )
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* Added Exporter to CCE
* Add Teiler to CCE
* Add EXPORTER_USER to adduser function
2025-06-25 15:53:29 +02:00
Pierre Delpy
92bc0557a3
fix: add obfuscation and basic auth to spot in cce and itcc ( #324 )
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Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2025-06-25 14:58:20 +02:00
djuarezgf
141f1f22d0
Use relative paths in teiler ( #320 )
2025-06-18 17:04:09 +02:00
Tobias Kussel
b4a788e010
docs: close Exporter code block in readme ( #318 )
2025-06-16 14:23:59 +02:00
djuarezgf
c33fbfc8bc
fix: Create Exporter User only if Exporter is enabled ( #317 )
2025-06-11 09:34:41 +02:00
Enola Knezevic
faa8abd4ee
chore: update eric.acc.root.crt.pem ( #316 )
2025-06-10 16:48:22 +02:00
djuarezgf
7693289d4d
docs: add Teiler and Exporter to the main README.md ( #315 )
...
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com >
2025-06-10 11:03:18 +02:00
djuarezgf
d482324361
feat: add Teiler and Exporter in BBMRI ( #312 )
...
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2025-06-05 16:55:03 +02:00
Martin Lablans
b7a42f3d3b
chore: externalize POSTGRES_TAG and bump postgres to 15.13 ( #313 )
2025-06-04 14:22:34 +02:00
Tim Schumacher
fd013232f5
Cache public organoid dashboard SQL query ( #309 )
2025-05-23 15:26:59 +02:00
DavidCroftDKFZ
eb52554892
docs: add faq ( #288 )
2025-05-22 18:10:40 +02:00
DavidCroftDKFZ
08c695e960
docs: Control import from Directory, improve README ( #297 )
2025-05-22 18:03:01 +02:00
DavidCroftDKFZ
1513fe1c6c
Added section relating to clearing data from Blaze ( #303 )
2025-05-22 18:01:43 +02:00
djuarezgf
af08a9fb08
chore: change some teiler variables ( #307 )
2025-05-20 16:24:24 +02:00
djuarezgf
b95f0efbe7
fix: add own url to teiler dashboard to make it offline compatible ( #305 )
2025-05-20 09:39:14 +02:00
Torben Brenner
99567e2b40
fix: Ensure transfair can properly communicate with the fhir server for requests ( #304 )
2025-05-19 17:01:37 +02:00
Jan
96ff6043a1
feat: allow transfair to talk to services behind the proxy ( #296 )
2025-05-09 13:52:33 +02:00
Jan
844ce3386e
chore(transfair): update transfair config ( #298 )
2025-05-09 11:30:26 +02:00
Martin Lablans
9782bf66b6
Code review: Move to /tmp/bridgehead/...
2025-05-08 09:18:02 +02:00
Tim Schumacher
87f0e8ad7f
Use temp directory for secret sync cache
2025-05-08 09:18:02 +02:00
Jan
7365be3e7b
chore(transfair): add option to disable tls verification ( #295 )
2025-04-17 12:01:45 +02:00
Enola Knezevic
c5d08c50a4
chore: add BBMRI ERIC acceptance env ( #294 )
2025-04-16 15:37:55 +02:00
Jan
72ecaadba8
fix: ssh-tunnel-setup.sh ( #293 )
2025-04-15 11:36:20 +02:00
Jan
2ddd535794
feat: ssh tunnel ( #292 )
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* Added ccp module for a ssh tunnel
Usage details under https://github.com/samply/ssh-tunnel
* chore: update ssh-tunnel image to harbor
* feat: ssh tunnel support diffrent port
* chore: fix indentation
* chore: move to top level modules
* docs: add ssh-tunnel docs
---------
Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de >
2025-04-14 10:45:15 +02:00
Jan
973547c322
chore(transfair): add new gw option ( #291 )
2025-04-11 08:37:31 +02:00
Jan
6b649c9233
feat: expose transfair via traefik ( #290 )
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Note: Requires a bridgehead install to generate the basic auth user
2025-04-09 13:19:52 +02:00
Tim Schumacher
3144ee5214
Fix GitLab token syncing for BBMRI
2025-03-31 11:08:59 +02:00
janskiba
68804dc71b
feat: add transfair setup to ccp
2025-03-26 13:11:43 +01:00
janskiba
e5aebfe382
chore!: update transfair config
2025-03-26 13:11:43 +01:00
Torben Brenner
6f3aba1eaa
feat: support self-signed cert on ttp ( #283 )
2025-03-12 15:45:55 +01:00
