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bridgehead
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999 Commits

Author SHA1 Message Date
Torben Brenner 6ca67ca082
Merge pull request #270 from samply/develop 2025-02-20 15:46:40 +01:00
Pierre Delpy 8334fac84d
fix: use correct obds2fhir-rest image 
---------

Co-authored-by: Pierre Delpy <p.delpy@dkfz-heidelberg.de>
 2025-02-20 13:48:10 +01:00
Torben Brenner 8000356b57
docs: explicitly clone main branch (#269) 2025-02-07 11:21:43 +01:00
Torben Brenner 74d8e68d96
Merge pull request #258 from samply/feat/routine-connector 
feat: transFAIR
 2025-02-07 10:39:54 +01:00
Torben Brenner c568a56651 refactor: set transfair log to info 2025-02-07 10:30:43 +01:00
Torben Brenner 8384143387 fix: make transfair reach the internal blaze stores 2025-02-07 09:17:17 +01:00
Torben Brenner 8fe73a8123 fix: support mode without ttp 2025-02-07 09:17:07 +01:00
Torben Brenner bca63e82a9 fix: don't use return in transfairSetup 
For some reason the return not only exits transfairSetup, but also the
bridgehead script
 2025-02-06 15:43:37 +01:00
Jan 721627a78f
feat: migrate to new dnpm:dip node (#251) 
* feat: migrate to new dnpm:dip node

* hardcode dnpm connector type to broker

* use `SITE_NAME` for dnpm `LOCAL_SITE`

* host central targets in git

* dnpm: add goettingen to central targets

* dnpm: add uksh to central targets

* dnpm: replace named volumes with fs volumes

* chore: change dnpm images

* chore: pin mysql

* dnpm: Secure endpoints for ETL and p2p communications (#254)

* fix authup redirect (#262)

When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP. 

Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.

* Whitespace formatting

---------

Co-authored-by: Niklas <niklas@ytvwld.de>
Co-authored-by: Niklas Reimer <niklas@backbord.net>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2025-02-05 13:24:28 +01:00
Jan e08ff92401
Merge pull request #268 from samply/main 
Main backport
 2025-02-05 08:45:35 +01:00
Jan e3553370b6
feat: unify version handeling (#265) 2025-01-29 13:17:59 +01:00
Jan 1ad73d8f82
fix: properly load oidc secrets (#267) 2025-01-29 10:59:27 +01:00
Tobias Kussel 0b6fa439ba
Merge pull request #266 from samply/fix/docker-hub-link 
Fixed Docker Hub URL list link
 2025-01-29 09:52:26 +01:00
Martin Lablans 615990b92a
Use secret-sync for gitpassword (#257) 
---------

Co-authored-by: Tim Schumacher <tim@tschumacher.net>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
Co-authored-by: Tim Schumacher <tim.schumacher@dkfz-heidelberg.de>
 2025-01-28 14:53:49 +01:00
Tobias Kussel db950d6d87 Fixed Docker Hub URL list link 2025-01-28 08:59:57 +00:00
patrickskowronekdkfz 6a71da3dd1 docs: documentation for changing your configuration repository access token (#256) 2025-01-27 10:49:10 +01:00
patrickskowronekdkfz 138a1fa5f1 fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME (#259) 2025-01-27 10:49:10 +01:00
patrickskowronekdkfz 39a87bcf61 Update: Blaze to version 0.31 (#260) 2025-01-27 10:49:10 +01:00
Jan 655d0d24c7 fix: remove `restart: always` in compose files (#261) 2025-01-27 10:49:10 +01:00
janskiba fa0d9fb8b4 restrict additional blaze memory usage 2025-01-24 09:23:08 +00:00
janskiba 139fcecabe redo transfair setup 2025-01-23 13:27:42 +00:00
janskiba 2058a7a5c9 update image url 2025-01-23 12:06:43 +00:00
janskiba 47364f999e wip: routine connector 2025-01-21 13:55:08 +00:00
patrickskowronekdkfz 910289079b
docs: documentation for changing your configuration repository access token (#256) 2025-01-21 09:35:25 +01:00
patrickskowronekdkfz 1003cd73cf
fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME (#259) 2025-01-21 09:30:20 +01:00
patrickskowronekdkfz 3d1105b97c
Update: Blaze to version 0.31 (#260) 2025-01-21 09:28:47 +01:00
Jan 5c28e704d2
fix: remove `restart: always` in compose files (#261) 2025-01-21 09:27:27 +01:00
Tobias Kussel df1ec21848
Merge pull request #246 from samply/develop 
set environment variables needed for the focus blaze-and-sql endpoint to work when fhir2sql is enabled
 2024-12-11 10:53:27 +01:00
patrickskowronekdkfz e3510363ad
fix: remove credentials from git remote, if update fails (#253) 
Signed-off-by: Patrick Skowronek <patrick.skowronek@dkfz-heidelberg.de>
 2024-12-10 17:18:07 +01:00
Enola Knezevic 45aefd24e5
renamed exporter API key to EXPORTER_API_KEY (#252) 2024-12-06 11:27:38 +01:00
patrickskowronekdkfz 122ff16bb1
fix: use verbis cache image instead of docker-hub (#250) 2024-11-12 09:58:17 +01:00
djuarezgf 967e45624e
Add exporter configuration to focus (#249) 2024-11-05 15:46:00 +01:00
Tobias Kussel 8cd5b93b95
Merge pull request #237 from samply/feat/ccp-ppi 
Feat/ccp ppi
 2024-11-05 13:59:01 +01:00
Jan 52c24ee6fa
fix(fhir2sql): add the postgres connection string to focus (#245) 2024-11-05 13:34:36 +01:00
davidmscholz 26712d3567
feat: add and set FOCUS_ENDPOINT_TYPE to support fhir2sql (#244) 
* add and set FOCUS_ENDPOINT_TYPE

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: davidmscholz <david.scholz@dkfz-heidelberg.de>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2024-10-30 15:21:15 +01:00
Pierre Delpy a4e292dd18
Merge pull request #241 from samply/develop 
feat: add focus tags in ccp and bbmri (#240)
 2024-10-23 07:24:06 +02:00
Enola Knezevic eea17c3478
fix: remove invalid beam-proxy tag and add it to focus instead (#242) 2024-10-22 16:48:48 +02:00
Pierre Delpy cf5230963c
feat: add focus tags in ccp and bbmri (#240) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2024-10-21 11:00:01 +02:00
Pierre Delpy 75089ab428
Merge pull request #221 from samply/develop 
Keep develop in sync with main
 2024-10-15 14:30:15 +02:00
Pierre Delpy 7aaee5e7d5
feat: add auto archiving action (#238) 
* feat: add auto archiving action

---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2024-10-15 13:03:42 +02:00
patrickskowronekdkfz 3312ca8a64
feat: added blaze cql cache (#236) 2024-10-10 14:34:28 +02:00
Patrick Skowronek 23981062bb Move ppi to id-management 2024-10-10 13:27:24 +02:00
Patrick Skowronek 8e7fe6851e fix: use correct mainzelliste api key 2024-10-10 13:11:43 +02:00
Patrick Skowronek 760d599b7c Add CCP-PPI 2024-10-10 12:56:36 +02:00
Pierre Delpy 072ee348fc
fix: deactivate landingpage for KR project (#234) 
fix: deactivate landingpage for KR project
 2024-10-09 09:24:27 +02:00
Torben Brenner f328e40963
Merge pull request #233 from samply/fix/id-management-redirection 
Allow Usage of Centraxx Interface without login
 2024-10-08 13:30:44 +02:00
Pierre Delpy 599bcfcec4
Feature/send branch to healthchecks (#232) 
feature: log git branches to healthchecks and code refactoring
 2024-10-02 07:53:20 +02:00
Torben Brenner eb2955872f fix: allow usage of centraxx interface without login 
Before this change CentraXX was redirected to the
central login servers then interacting with the id-management
 2024-10-01 13:30:23 +02:00
Martin Lablans 24da24d05e
Traefik dashboard 
Deactivate traefik dashboard by default. Add trailing slash to PathPrefix to clarify the URL the dashboard is available at.
 2024-10-01 10:40:24 +02:00
Pierre Delpy 65359c2ee6
Feature/pilot projects backup (#227) 
add pilot projects
 2024-09-12 10:04:53 +02:00