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bridgehead
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932 Commits

Author SHA1 Message Date
davidmscholz ed8dacaa59
Fix fhir2sql db pw generation (#219) 
fix postgresql password generation so that the password does not contain problematic characters that mess with the connection string
 2024-08-29 09:15:22 +02:00
Jan 3fe781255b
feat: Configure beam-connect to trust ds-orchestrator beam proxy (#220) 2024-08-29 09:07:50 +02:00
Torben Brenner b9f0bf7064
Merge pull request #205 from samply/fix/login-confusion-with-datashield 
fix: specify host for id-management login
 2024-08-20 08:22:24 +02:00
Torben Brenner 6228cb3762 fix: specify host for id-management login 
Otherwise traefik will match the route with the one specified in datashield-compose.yml
 2024-08-19 17:09:10 +02:00
Torben Brenner 05fa323c33
Merge pull request #198 from samply/fix/idmanagement-authentication 
Switch ID-Management to Keycloak from Samply.Auth
 2024-08-19 15:53:54 +02:00
Torben Brenner 33843fe961 fix: switch id-management to keycloak 2024-08-19 14:43:21 +02:00
Torben Brenner 0f1f88f538
Merge pull request #204 from samply/fix/environment 
Don't repeat definition of ENVIRONMENT var
 2024-08-19 09:15:52 +02:00
Martin Lablans 60acac619d Don't repeat definition of ENVIRONMENT var 2024-08-19 08:38:34 +02:00
Tobias Kussel 376cd03bed
Merge pull request #203 from samply/fix/environment 
export ENVIRONMENT
 2024-08-19 08:33:05 +02:00
Patrick Skowronek ae95f14030 export ENVIRONMENT 2024-08-19 08:27:20 +02:00
Martin Lablans 25e1d4fb15
Merge pull request #202 from samply/main_fix_dirsync_passwd 
Fixed environment variable passing for Directory sync
 2024-08-15 13:43:39 +02:00
lablans 18c9e1bb30 Remove DP statement already present in readme. 2024-08-15 11:43:14 +00:00
lablans de847f309c Provide defaults 2024-08-15 11:40:44 +00:00
DavidCroftDKFZ 3496fa7a0f Let Directory sync handle connection with Blaze 
Remove the delayed start, because Directory sync will automatically keep trying to
connect to Blaze if not initially present.
 2024-08-15 13:36:57 +02:00
DavidCroftDKFZ 95574f38be Included Blaze dependency 2024-08-15 10:33:28 +02:00
Jan bff316cde1
Merge pull request #201 from samply/update/landing-page 
Added env to landing-page
 2024-08-15 10:00:09 +02:00
DavidCroftDKFZ b8b81b1242 Fixed environment variable passing for Directory sync 
There were problems with the passing of environment variables from
bbmri.conf to the Directory synce container:

* The Directory password variable was misspellt.
* Some useful variables were missing.

Additionally, a delay was added before launching Directory sync,
to give Blaze time to start up.
 2024-08-15 09:17:34 +02:00
Patrick Skowronek 7c560a2e93 Added env to landing-page 2024-08-15 09:10:37 +02:00
Martin Lablans 4a13395408
Merge pull request #200 from samply/reduce-update-interval 
Reduce bridgehead update interval to once a day at 6am
 2024-08-05 08:29:15 +02:00
Tobias Kussel 35d6a17778
Fix bridgehead update timer time convention 
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2024-08-01 11:39:03 +02:00
Tobias Kussel ecd9269022
Add bridgehead update timer persistance 
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2024-08-01 11:38:25 +02:00
Tobias Kussel 5227dc57a7
Fix systemd timer description 
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2024-08-01 11:32:15 +02:00
Tobias Kussel 62edaf99e0 Reduce bridgehead update interval to once a day at 6am 2024-08-01 11:23:56 +02:00
Tobias Kussel 9c941853bd
Merge pull request #196 from samply/new-dashboard-backend 
Add new/additional dashboard backend
 2024-08-01 10:05:32 +02:00
Tobias Kussel 2e5aeabca8 Rename fhir2sql module files 2024-07-30 07:44:47 +00:00
Tobias Kussel af44b6b446 Fix depends_on syntax 2024-07-30 07:40:49 +00:00
davidmscholz 5ed07423f3 fix dashboard-compose 2024-07-30 09:24:07 +02:00
davidmscholz df08d67839 add optional dashboard module 2024-07-29 10:45:00 +02:00
Torben Brenner 964c5324e6
Merge pull request #160 from samply/main_directory_sync_extra_attributes_and_star_model 
Allow user to push star model facts to Directory
 2024-07-26 14:09:39 +02:00
Torben Brenner 023be58528
Merge pull request #195 from samply/feature/caching-ccp 
add caching in focus
 2024-07-26 14:07:15 +02:00
DavidCroftDKFZ 8942b923b3 Added comment for consistency with Directory Sync README 2024-07-26 09:57:40 +02:00
DavidCroftDKFZ 3f8bb158bc Merge branch 'main' into main_directory_sync_extra_attributes_and_star_model 2024-07-25 16:54:47 +02:00
Torben Brenner c3b770b70f
Merge pull request #194 from samply/workaround/secondary-cortex-blaze 
Workaround/secondary cortex blaze
 2024-07-25 10:32:38 +02:00
Pierre Delpy d316f1c798 add caching in focus 2024-07-24 13:56:53 +02:00
djuarezgf 293810f254 Added: exporter with blaze-secondary 2024-07-18 14:06:47 +02:00
p.delpy@dkfz-heidelberg.de 6b4480c54b workaround: add second blaze 2024-07-18 14:06:47 +02:00
Tobias Kussel a92b2eff76
Merge pull request #193 from samply/Fix-patientlisturl-in-obds2fhir-rest-compose.yml 
Fix patientlisturl in obds2fhir-rest-compose.yml
 2024-07-16 10:59:53 +02:00
Pierre Delpy b36c9ae03e
Fix patientlisturl in obds2fhir-rest-compose.yml 2024-07-16 10:49:23 +02:00
Torben Brenner 16629f3e45
Merge pull request #192 from samply/hotfix/idmanagementFlag 
fix: use correct ID management flag for oBDS2FHIR and MTBA
 2024-07-16 10:20:15 +02:00
Pierre Delpy 91dc31d039 fix: use correct ID management flag for oBDS2FHIR 2024-07-08 14:31:09 +02:00
patrickskowronekdkfz 7c54b6bb08
Merge pull request #191 from samply/fix/oauth-redirect 
fix: Fix traefik label for oauth2 redirect
 2024-07-03 15:10:28 +02:00
janskiba 9e4bc214ce fix: Fix traefik label for oauth2 redirect 2024-07-03 13:01:02 +00:00
patrickskowronekdkfz 94a38155b5
Merge pull request #190 from samply/feature/obds-fhir 
feature: upgrade to oBDS2FHIR
 2024-07-02 09:19:26 +02:00
Pierre Delpy 2ee8e0185a feature: upgrade to oBDS2FHIR 2024-07-02 08:57:15 +02:00
Martin Lablans f28e3c2cd2 Remove unnecessary default values 2024-07-01 15:19:44 +02:00
Martin Lablans 91ff51304b Add new dashboard backend 2024-07-01 15:14:38 +02:00
Torben Brenner e28b125b93
Merge pull request #189 from samply/fix/updateBlazeVersion 
fix: set blaze to version 0.28
 2024-06-28 14:31:56 +02:00
Torben Brenner f7751b9d92 fix: set blaze to version 0.28 
The 0.28 release is not downgradeable, therefore switching again to 0.28
 2024-06-28 14:29:56 +02:00
Torben Brenner 4da71353cc
Merge pull request #188 from samply/fix/blazeDktkNotRunning 
Switch to old blaze Version
 2024-06-28 13:59:20 +02:00
Torben Brenner 0db7df1440
Update docker-compose.yml 2024-06-28 13:57:30 +02:00