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bridgehead
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407 Commits

Author SHA1 Message Date
janskiba 1edcdce5c6 fix: beam connect site renaming 2024-02-27 12:47:31 +01:00
janskiba 9f31e950a5 fix: generate the right beam connect mappings 2024-02-27 12:47:31 +01:00
janskiba 371097377a feat: Add token-manager to beam 2024-02-27 12:47:31 +01:00
janskiba 0a2dbb4b2d fix: Restrict rstudio network access 2024-02-27 12:47:31 +01:00
juarez 148e87341f move OAUTH2_SECRET 2024-02-27 12:47:31 +01:00
juarez 28a612f218 add default template-ids of exporter and reporter 2024-02-27 12:47:31 +01:00
juarez e411883d18 mtba develop 2024-02-27 12:47:31 +01:00
juarez 0b2e64a2d5 add /oauth2/callback and /mtba to Keycloak private client 2024-02-27 12:47:31 +01:00
juarez 25ac4d2590 mtba latest 2024-02-27 12:47:31 +01:00
juarez f9b26b6958 Use develop branch for mtba 2024-02-27 12:47:27 +01:00
janskiba b44a208e08 Better redirect url handeling 2024-02-27 12:47:13 +01:00
juarez 0cd4ededc7 Add oauth2_proxy 2024-02-27 12:47:13 +01:00
juarez f6965859fe Add comment about PASSWORD and DISABLE_AUTH in R-Studio 2024-02-27 12:47:13 +01:00
juarez ae965fddb3 Add proxy to R-Studio for loading R packages 2024-02-27 12:47:13 +01:00
juarez 903ef0df9b Add Keycloak to MTBA 2024-02-27 12:47:13 +01:00
juarez e32f484c31 Add keycloak configuration 2024-02-27 12:47:13 +01:00
juarez 8486abedd4 Add R-Studio Admin Password 2024-02-27 12:47:13 +01:00
juarez 163650f592 Add generate_password function 2024-02-27 12:47:13 +01:00
juarez bb076c5d5a Add function generate_redirect_urls 2024-02-27 12:47:13 +01:00
janskiba 0015365d1b Generate addtional redirect url 2024-02-27 12:47:13 +01:00
juarez dc3d5496e1 Integrate central Keycloak in Teiler 2024-02-27 12:47:13 +01:00
juarez 3d136959e7 Bugfix: Add version in every docker compose file 2024-02-27 12:47:13 +01:00
juarez 8e171b71de Remove unnecessary version of docker-compose.override files 2024-02-27 12:47:13 +01:00
juarez d3edb5e143 Bugfix: Add version in every docker compose file 2024-02-27 12:47:13 +01:00
juarez b87d746a20 Remove unnecessary version of docker-compose.override files 2024-02-27 12:47:09 +01:00
juarez afb63306a8 Remove unnecessary version of docker-compose.override files 2024-02-27 12:46:36 +01:00
Martin Lablans 90ee8d63f7 Externalize postgres version 2024-02-27 12:44:33 +01:00
juarez 8d4f487806 MTBA 1.0.0 2024-02-27 12:44:33 +01:00
juarez a2c242583e Remove nngmSetup in vars 2024-02-27 12:44:33 +01:00
Martin Lablans 178867cde7 Prevent creation of volumes 2024-02-27 12:44:33 +01:00
lablans 77240ff92f Use Bridgehead's internal http proxy 2024-02-27 12:44:33 +01:00
Martin Lablans 876c4efa41 Make Opal use proxy server 2024-02-27 12:44:33 +01:00
janskiba 058d1c83e6 Use newest version of `beam-connect` 2024-02-27 12:44:33 +01:00
juarez ec6407414b Update export template script: FHIR_QUERY to FHIR_PATH 2024-02-27 12:44:33 +01:00
juarez 89c90d3aa0 /var/cache for mtba 2024-02-27 12:44:32 +01:00
juarez 0039efa353 Add docu about login in teiler 2024-02-27 12:44:32 +01:00
juarez c1020c569a Bugfix: datashield local.json as array 2024-02-27 12:44:32 +01:00
Martin Lablans 2237562e6e Prevent anonymous volume creation 2024-02-27 12:44:32 +01:00
juarez c8fc35576e Bugfix: Exporter and Reporter /var/cache volumes 2024-02-27 12:44:32 +01:00
juarez 3dfc4cf57d Postgres 15.4 in datashield, exporter and login 2024-02-27 12:44:32 +01:00
djuarezgf 3a6520a668 Update ccp/modules/mtba.md 
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2024-02-27 12:44:32 +01:00
janskiba e2f31b6eeb Make sure copy works and the correct owner is set 2024-02-27 12:43:34 +01:00
janskiba 452946aa04 Add all sites 2024-02-27 12:43:34 +01:00
janskiba 5c7da0d40d Auto generate mappings 2024-02-27 12:43:34 +01:00
juarez 77145277de Add ccp to /var/cache/bridgehead/* volumes 2024-02-27 12:43:34 +01:00
lablans 9cdcf2afb8 Rewrite comments 2024-02-27 12:43:34 +01:00
lablans 13a74e5dab Move exporter db to /var/cache/bridgehead 2024-02-27 12:43:34 +01:00
lablans c33726d385 Exporter cache 2024-02-27 12:43:34 +01:00
lablans f38d9f8c19 Rework commented sections 2024-02-27 12:43:34 +01:00
lablans b5ca5ea4a7 Autogenerate maps for Opal's beam-connect. To be completed by @Threated with a map-generator in the script. 2024-02-27 12:43:34 +01:00
lablans 862e452f3c Cache opal in /var/cache/bridgehead 2024-02-27 12:43:34 +01:00
juarez 4aa8f0f3ba Bugfix: Add version in every docker compose file 2024-02-27 12:43:33 +01:00
juarez ccf0b91f17 #!/bin/bash -e 2024-02-27 12:43:33 +01:00
juarez 720783249d Bugfix: LDM_AUTH instead of LDM_PASSWORD 2024-02-27 12:43:33 +01:00
juarez 2b3eabe95c Rename Teiler Backend, Teiler Dashboard and Teiler Orchestrator 2024-02-27 12:43:33 +01:00
juarez 14aece46f7 Add site to exporter and reporter 2024-02-27 12:43:33 +01:00
juarez ff1f7904ad Add forward proxy to teiler-core 2024-02-27 12:43:33 +01:00
juarez 8d38adc91e Bugfix: mtba labels 2024-02-27 12:43:33 +01:00
juarez cfc3c7c90e Bugfix: exporter 2024-02-27 12:43:33 +01:00
juarez 963144cc31 Disable datashield 2024-02-27 12:43:33 +01:00
juarez 765613b87f Bugfix: MTBA path prefix 2024-02-27 12:43:32 +01:00
juarez 2b61775652 Enable datashield 2024-02-27 12:43:32 +01:00
juarez 4b0b17424f Comment Keycloak volume 2024-02-27 12:43:32 +01:00
juarez f26a8f7a71 Fix comment in login-compose.yml 2024-02-27 12:43:32 +01:00
juarez 973b5828f6 Remove old comment of exporter-setup.sh 2024-02-27 12:43:32 +01:00
juarez 839e7a4518 Comment on datashield volume 2024-02-27 12:43:32 +01:00
juarez 6cfb42dc9b Comment on export and report volumes 2024-02-27 12:43:32 +01:00
juarez 5d8bec53c0 Bugfix: JAVA_OPTS for exporter 2024-02-27 12:43:32 +01:00
juarez c52975f204 Add mtba module documentation 2024-02-27 12:43:32 +01:00
juarez 957fa64ce9 Add teiler-ui module documentation 2024-02-27 12:43:32 +01:00
janskiba b4805af0a1 Add some docs about beam-connect 2024-02-27 12:43:31 +01:00
juarez e3b8a7369b Add login module documentation 2024-02-27 12:43:31 +01:00
juarez adeaf433dc Add Exporter module documentation 2024-02-27 12:43:31 +01:00
juarez 846e9c23a7 Add DataSHIELD module documentation 2024-02-27 12:43:31 +01:00
juarez bb7451d8c3 Add JAVA_OPTS to reporter and exporter 2024-02-27 12:43:31 +01:00
juarez 26165232f0 Enable Login, Teiler and Exporter 2024-02-27 12:43:31 +01:00
juarez 7ed24f667d Export and QB Curl templates 2024-02-27 12:43:31 +01:00
juarez d97ac56126 Generate exporter api key automatically 2024-02-27 12:43:31 +01:00
juarez e7f6c0b1a0 Add default language to ccp 2024-02-27 12:43:31 +01:00
juarez c4c4f743d2 Remove updater cron of teiler-core 2024-02-27 12:43:31 +01:00
juarez be9adcbfa2 Remove clean temp files configuration of exporter 2024-02-27 12:43:30 +01:00
juarez 10a362c237 Add explanation why is the volume of exporter-db currently so important for us. 2024-02-27 12:43:30 +01:00
juarez 75c86b79e8 Add Teiler Admin to Keycloak 2024-02-27 12:43:30 +01:00
juarez a6443a6857 Remove IS_DKTK_SITE 2024-02-27 12:43:30 +01:00
juarez f3745b973a User default user rstudio in rstudio 2024-02-27 12:43:30 +01:00
Martin Lablans 50d28d293f Generate DATASHIELD_CONNECT_SECRET automatically 2024-02-27 12:43:30 +01:00
Martin Lablans 44415369cc Update ccp/modules/datashield-compose.yml 2024-02-27 12:43:30 +01:00
Martin Lablans 9b8331ed28 Update ccp/modules/datashield-compose.yml 2024-02-27 12:43:30 +01:00
Martin Lablans 73d969e374 Use LDM_PASSWORD for all admin passwords 2024-02-27 12:43:30 +01:00
juarez 840096d1d5 Enable only if true 2024-02-27 12:43:29 +01:00
juarez 43c45f0628 Remove todo in rstudio 2024-02-27 12:43:29 +01:00
juarez e182e2fbe6 Remove unnecessary version of docker-compose.override files 2024-02-27 12:43:23 +01:00
juarez c8bafb2461 R-Server rock-base:6.3 2024-02-27 12:42:38 +01:00
juarez 0866cacc5a User postgres if docker.verbis.dkfz.de 2024-02-27 12:42:38 +01:00
juarez a1e76a61b8 Remove ports of beam-connect in datashield-compose.yml 2024-02-27 12:42:38 +01:00
juarez 09aa33c912 Generate passwords only if modules are enabled 2024-02-27 12:42:38 +01:00
juarez 36ac8d41c8 Add http scheme to exporter 2024-02-27 12:42:37 +01:00
janskiba c003999721 Migrate to new app key syntax 2024-02-27 12:42:37 +01:00
juarez 50360d3f41 update new broker 2024-02-27 12:42:37 +01:00
juarez 5148e3382d Add parameter LOG_FHIR_VALIDATION to exporter 2024-02-27 12:42:37 +01:00
juarez 2d7d1d73b3 Add reporter 2024-02-27 12:42:37 +01:00
janskiba 20c65336e6 Switch to `no-auth` branch of beam-connect 2024-02-27 12:42:37 +01:00
janskiba 276f886546 secrets are readonly by default 2024-02-27 12:42:37 +01:00
janskiba bc239c0b02 change to dockerhub image 2024-02-27 12:42:37 +01:00
janskiba 6438fc5f4e Change beam-connect version and load opal cert 2024-02-27 12:42:37 +01:00
janskiba f2f48869af Change cert permission and location 2024-02-27 12:42:36 +01:00
juarez e9e1ce5a65 ccp.conf in teiler-core as secret 2024-02-27 12:42:36 +01:00
juarez 687dbba383 Add opal certificate 2024-02-27 12:42:36 +01:00
juarez 5e376b17ad Remove unnecessary volumes 2024-02-27 12:42:36 +01:00
juarez 04cf5128b0 Remove mongo db 2024-02-27 12:42:36 +01:00
juarez 43ab59563c Add Opal Password in Exporter 2024-02-27 12:42:36 +01:00
Martin Lablans 996f53a164 expose beam connect ports 2024-02-27 12:42:36 +01:00
Martin Lablans b5ce188842 Fix beam connect app id 2024-02-27 12:42:36 +01:00
Martin Lablans 325ae1d574 beam connect and move beam-connect config 2024-02-27 12:42:36 +01:00
juarez 68782d1c32 Experiment 2024-02-27 12:42:35 +01:00
juarez dfde7c18ff Experiment 2024-02-27 12:42:35 +01:00
juarez 0b1e0474d7 Add DataSHIELD 2024-02-27 12:42:35 +01:00
juarez 72255e6211 Bugfix: cross origins of exporter 2024-02-27 12:42:35 +01:00
juarez 32de51eefb Merge id-management-setup with main 2024-02-27 12:42:35 +01:00
juarez 0cfe1d3617 Change salt string for exporter and login 2024-02-27 12:42:35 +01:00
juarez fe07c63f36 Adapt teiler-ui to traefik 2024-02-27 12:42:35 +01:00
juarez 3a91259a8a Add keycloak teiler app to teiler-ui 2024-02-27 12:42:35 +01:00
juarez 4bbd2a15fe Change volume names for teiler components 2024-02-27 12:42:35 +01:00
juarez 0a17bbc81f Add stripprefix to teiler-ui 2024-02-27 12:42:35 +01:00
juarez c794508880 Add stripprefix to teiler-core 2024-02-27 12:42:34 +01:00
juarez 3e0bf38018 Add forward strategy to teiler-core 2024-02-27 12:42:34 +01:00
juarez e2d109558d Add forward strategy to teiler-core 2024-02-27 12:42:34 +01:00
juarez 9299a201a6 Deactivate traffik for mtba 2024-02-27 12:42:34 +01:00
juarez c9b1975c9e Tidy teiler and mtba volumes 2024-02-27 12:42:34 +01:00
juarez 17f52a7907 Add Teiler Core 2024-02-27 12:42:34 +01:00
juarez 4d1a9bb701 Add Endpoint for Teiler 2024-02-27 12:42:34 +01:00
juarez efc04cea4f Update Teiler Core config 2024-02-27 12:42:34 +01:00
juarez 8fe03a6cd2 Add original Keycloak config 2024-02-27 12:42:34 +01:00
p.delpy@dkfz-heidelberg.de c66dac9881 update keykloak config 2024-02-27 12:42:33 +01:00
p.delpy@dkfz-heidelberg.de 38c7f3c24a beautiful config 2024-02-27 12:42:33 +01:00
juarez 49be101165 Rename teiler to exporter (bugfix) 2024-02-27 12:42:33 +01:00
juarez 6626f860a2 Rename teiler to exporter 2024-02-27 12:42:33 +01:00
juarez eb17d8c159 Configure login extern URLs 2024-02-27 12:42:33 +01:00
juarez 6340acdbe8 Bugfix: services in teiler-ui-compose.yml 2024-02-27 12:42:32 +01:00
juarez c916a357dc Change images of dktk-teiler and dktk-keycloak 2024-02-27 12:42:32 +01:00
juarez 20e2b2a0ed Add nngm and exliquid modules 2024-02-27 12:42:32 +01:00
juarez 2e6edb6179 Add Teiler UI and Teiler module 2024-02-27 12:42:32 +01:00
Tobias Kussel c58096aa27
Merge pull request #155 from samply/fix/dnpm-no-proxy 
Add DNPM_NO_PROXY configuration option
 2024-02-23 11:37:47 +01:00
Tobias Kussel 3f6e3a2bb4 mount and process trusted certs in dnpm-beam-connect 2024-02-22 15:41:11 +00:00
Tobias Kussel 9937002d06 Add DNPM_NO_PROXY configuration option 2024-02-21 15:04:00 +00:00
Torben Brenner 7d07c0623d refactor: optimize memory usage of blaze 2024-02-20 15:27:00 +01:00
Tobias Kussel aac31945a3 Add dnpm echo to dnpm-compose 2024-02-19 08:50:15 +00:00
Martin Lablans 60b2bddf15
Merge pull request #146 from samply/fix/updates 
Fix image updates for image names with vars
 2024-02-14 16:37:28 +01:00
janskiba 001b84a774 Revert "Merge pull request #147 from samply/fix/set-focus-version-to-main" 
This reverts commit 6550c0cdab, reversing
changes made to 40d991d94e.
 2024-02-12 08:55:29 +00:00
Martin Lablans 44ac09b9c1 Bump postgres version to 15.6 2024-02-09 16:58:02 +01:00