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Author SHA1 Message Date
DavidCroftDKFZ
364cf5f1c9 Added more detail to metadata feedback README 2025-02-06 16:20:54 +01:00
DavidCroftDKFZ
e571681fce Added clarifying information to README 2025-02-06 16:04:59 +01:00
Gerhard Salvini
4f5f6b17e7 Added metadata feedback to README 2025-02-06 11:23:19 +01:00
Gerhard Salvini
146235236b Removed stuff accumulated during testing phase 
Most of the things added during testing were not necessary and they were
removed. This had the additional advantage that many files are now identical
to their equivalents in the develop branch, making the diff more manageable.
 2025-02-06 09:28:48 +01:00
Gerhard Salvini
0169435074 We are not using the Teiler in this pilot 2025-02-05 15:10:29 +01:00
Gerhard Salvini
6c71a83e70 Added startup script for metadata feedback 2025-02-05 14:30:24 +01:00
Gerhard Salvini
ed95dff63e Merge branch 'develop' into metadata_fb 2025-02-05 14:02:47 +01:00
Gerhard Salvini
3841a98a3b Push hub URL into /etc/bridgehead/bbmri.conf 2025-02-05 13:50:12 +01:00
Jan
721627a78f feat: migrate to new dnpm:dip node (#251) 
* feat: migrate to new dnpm:dip node

* hardcode dnpm connector type to broker

* use `SITE_NAME` for dnpm `LOCAL_SITE`

* host central targets in git

* dnpm: add goettingen to central targets

* dnpm: add uksh to central targets

* dnpm: replace named volumes with fs volumes

* chore: change dnpm images

* chore: pin mysql

* dnpm: Secure endpoints for ETL and p2p communications (#254)

* fix authup redirect (#262)

When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP. 

Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.

* Whitespace formatting

---------

Co-authored-by: Niklas <niklas@ytvwld.de>
Co-authored-by: Niklas Reimer <niklas@backbord.net>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2025-02-05 13:24:28 +01:00
DavidCroftDKFZ
710092c020 Autogenerate secrets for feedback-agent 2025-02-05 11:17:38 +01:00
Jan
e08ff92401 Merge pull request #268 from samply/main 
Main backport
 2025-02-05 08:45:35 +01:00
DavidCroftDKFZ
9977578aa5 Changes for metadata feedback 
These changes fall into the following categories:

* Integration of the feedback components into Traefik.
* Small tweaks to Bridgehead parameters needed by metadata feedback.
* Reverting changes made to some files for testing purposes.
 2025-02-04 14:55:08 +01:00
Jan
e3553370b6 feat: unify version handeling (#265) 2025-01-29 13:17:59 +01:00
Jan
1ad73d8f82 fix: properly load oidc secrets (#267) 2025-01-29 10:59:27 +01:00
Tobias Kussel
0b6fa439ba Merge pull request #266 from samply/fix/docker-hub-link 
Fixed Docker Hub URL list link
 2025-01-29 09:52:26 +01:00
Martin Lablans
615990b92a Use secret-sync for gitpassword (#257) 
---------

Co-authored-by: Tim Schumacher <tim@tschumacher.net>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
Co-authored-by: Tim Schumacher <tim.schumacher@dkfz-heidelberg.de>
 2025-01-28 14:53:49 +01:00
Tobias Kussel
db950d6d87 Fixed Docker Hub URL list link 2025-01-28 08:59:57 +00:00
patrickskowronekdkfz
6a71da3dd1 docs: documentation for changing your configuration repository access token (#256) 2025-01-27 10:49:10 +01:00
patrickskowronekdkfz
138a1fa5f1 fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME (#259) 2025-01-27 10:49:10 +01:00
patrickskowronekdkfz
39a87bcf61 Update: Blaze to version 0.31 (#260) 2025-01-27 10:49:10 +01:00
Jan
655d0d24c7 fix: remove restart: always in compose files (#261) 2025-01-27 10:49:10 +01:00
patrickskowronekdkfz
910289079b docs: documentation for changing your configuration repository access token (#256) 2025-01-21 09:35:25 +01:00
patrickskowronekdkfz
1003cd73cf fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME (#259) 2025-01-21 09:30:20 +01:00
patrickskowronekdkfz
3d1105b97c Update: Blaze to version 0.31 (#260) 2025-01-21 09:28:47 +01:00
Jan
5c28e704d2 fix: remove restart: always in compose files (#261) 2025-01-21 09:27:27 +01:00
Tobias Kussel
df1ec21848 Merge pull request #246 from samply/develop 
set environment variables needed for the focus blaze-and-sql endpoint to work when fhir2sql is enabled
 2024-12-11 10:53:27 +01:00
patrickskowronekdkfz
e3510363ad fix: remove credentials from git remote, if update fails (#253) 
Signed-off-by: Patrick Skowronek <patrick.skowronek@dkfz-heidelberg.de>
 2024-12-10 17:18:07 +01:00
Enola Knezevic
45aefd24e5 renamed exporter API key to EXPORTER_API_KEY (#252) 2024-12-06 11:27:38 +01:00
patrickskowronekdkfz
122ff16bb1 fix: use verbis cache image instead of docker-hub (#250) 2024-11-12 09:58:17 +01:00
djuarezgf
967e45624e Add exporter configuration to focus (#249) 2024-11-05 15:46:00 +01:00
Tobias Kussel
8cd5b93b95 Merge pull request #237 from samply/feat/ccp-ppi 
Feat/ccp ppi
 2024-11-05 13:59:01 +01:00
Jan
52c24ee6fa fix(fhir2sql): add the postgres connection string to focus (#245) 2024-11-05 13:34:36 +01:00
davidmscholz
26712d3567 feat: add and set FOCUS_ENDPOINT_TYPE to support fhir2sql (#244) 
* add and set FOCUS_ENDPOINT_TYPE

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: davidmscholz <david.scholz@dkfz-heidelberg.de>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2024-10-30 15:21:15 +01:00
Pierre Delpy
a4e292dd18 Merge pull request #241 from samply/develop 
feat: add focus tags in ccp and bbmri (#240)
 2024-10-23 07:24:06 +02:00
Enola Knezevic
eea17c3478 fix: remove invalid beam-proxy tag and add it to focus instead (#242) 2024-10-22 16:48:48 +02:00
Pierre Delpy
cf5230963c feat: add focus tags in ccp and bbmri (#240) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2024-10-21 11:00:01 +02:00
Bridgehead User
634d4e2a4b Added comments explaining how things have been changed for local testing 2024-10-18 13:32:06 +02:00
Bridgehead User
bc24599c54 Beam suppressed 
Changes have been made so that the Bridgehead can run without Beam.
 2024-10-18 11:15:18 +02:00
Pierre Delpy
75089ab428 Merge pull request #221 from samply/develop 
Keep develop in sync with main
 2024-10-15 14:30:15 +02:00
Pierre Delpy
7aaee5e7d5 feat: add auto archiving action (#238) 
* feat: add auto archiving action

---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2024-10-15 13:03:42 +02:00
patrickskowronekdkfz
3312ca8a64 feat: added blaze cql cache (#236) 2024-10-10 14:34:28 +02:00
Patrick Skowronek
23981062bb Move ppi to id-management 2024-10-10 13:27:24 +02:00
Patrick Skowronek
8e7fe6851e fix: use correct mainzelliste api key 2024-10-10 13:11:43 +02:00
Patrick Skowronek
760d599b7c Add CCP-PPI 2024-10-10 12:56:36 +02:00
Pierre Delpy
072ee348fc fix: deactivate landingpage for KR project (#234) 
fix: deactivate landingpage for KR project
 2024-10-09 09:24:27 +02:00
Torben Brenner
f328e40963 Merge pull request #233 from samply/fix/id-management-redirection 
Allow Usage of Centraxx Interface without login
 2024-10-08 13:30:44 +02:00
Pierre Delpy
599bcfcec4 Feature/send branch to healthchecks (#232) 
feature: log git branches to healthchecks and code refactoring
 2024-10-02 07:53:20 +02:00
Torben Brenner
eb2955872f fix: allow usage of centraxx interface without login 
Before this change CentraXX was redirected to the
central login servers then interacting with the id-management
 2024-10-01 13:30:23 +02:00
Martin Lablans
24da24d05e Traefik dashboard 
Deactivate traefik dashboard by default. Add trailing slash to PathPrefix to clarify the URL the dashboard is available at.
 2024-10-01 10:40:24 +02:00
Pierre Delpy
65359c2ee6 Feature/pilot projects backup (#227) 
add pilot projects
 2024-09-12 10:04:53 +02:00