146235236b
Removed stuff accumulated during testing phase
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Most of the things added during testing were not necessary and they were
removed. This had the additional advantage that many files are now identical
to their equivalents in the develop branch, making the diff more manageable.
2025-02-06 09:28:48 +01:00
0169435074
We are not using the Teiler in this pilot
2025-02-05 15:10:29 +01:00
6c71a83e70
Added startup script for metadata feedback
2025-02-05 14:30:24 +01:00
ed95dff63e
Merge branch 'develop' into metadata_fb
2025-02-05 14:02:47 +01:00
3841a98a3b
Push hub URL into /etc/bridgehead/bbmri.conf
2025-02-05 13:50:12 +01:00
721627a78f
feat: migrate to new dnpm:dip node ( #251 )
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* feat: migrate to new dnpm:dip node
* hardcode dnpm connector type to broker
* use `SITE_NAME` for dnpm `LOCAL_SITE`
* host central targets in git
* dnpm: add goettingen to central targets
* dnpm: add uksh to central targets
* dnpm: replace named volumes with fs volumes
* chore: change dnpm images
* chore: pin mysql
* dnpm: Secure endpoints for ETL and p2p communications (#254 )
* fix authup redirect (#262 )
When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP.
Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.
* Whitespace formatting
---------
Co-authored-by: Niklas <niklas@ytvwld.de >
Co-authored-by: Niklas Reimer <niklas@backbord.net >
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com >
2025-02-05 13:24:28 +01:00
710092c020
Autogenerate secrets for feedback-agent
2025-02-05 11:17:38 +01:00
e08ff92401
Merge pull request #268 from samply/main
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Main backport
2025-02-05 08:45:35 +01:00
9977578aa5
Changes for metadata feedback
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These changes fall into the following categories:
* Integration of the feedback components into Traefik.
* Small tweaks to Bridgehead parameters needed by metadata feedback.
* Reverting changes made to some files for testing purposes.
2025-02-04 14:55:08 +01:00
e3553370b6
feat: unify version handeling ( #265 )
2025-01-29 13:17:59 +01:00
1ad73d8f82
fix: properly load oidc secrets ( #267 )
2025-01-29 10:59:27 +01:00
0b6fa439ba
Merge pull request #266 from samply/fix/docker-hub-link
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Fixed Docker Hub URL list link
2025-01-29 09:52:26 +01:00
615990b92a
Use secret-sync for gitpassword ( #257 )
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---------
Co-authored-by: Tim Schumacher <tim@tschumacher.net >
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
Co-authored-by: Tim Schumacher <tim.schumacher@dkfz-heidelberg.de >
2025-01-28 14:53:49 +01:00
db950d6d87
Fixed Docker Hub URL list link
2025-01-28 08:59:57 +00:00
6a71da3dd1
docs: documentation for changing your configuration repository access token ( #256 )
2025-01-27 10:49:10 +01:00
138a1fa5f1
fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME ( #259 )
2025-01-27 10:49:10 +01:00
39a87bcf61
Update: Blaze to version 0.31 ( #260 )
2025-01-27 10:49:10 +01:00
655d0d24c7
fix: remove restart: always in compose files ( #261 )
2025-01-27 10:49:10 +01:00
910289079b
docs: documentation for changing your configuration repository access token ( #256 )
2025-01-21 09:35:25 +01:00
1003cd73cf
fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME ( #259 )
2025-01-21 09:30:20 +01:00
3d1105b97c
Update: Blaze to version 0.31 ( #260 )
2025-01-21 09:28:47 +01:00
5c28e704d2
fix: remove restart: always in compose files ( #261 )
2025-01-21 09:27:27 +01:00
df1ec21848
Merge pull request #246 from samply/develop
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set environment variables needed for the focus blaze-and-sql endpoint to work when fhir2sql is enabled
2024-12-11 10:53:27 +01:00
e3510363ad
fix: remove credentials from git remote, if update fails ( #253 )
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Signed-off-by: Patrick Skowronek <patrick.skowronek@dkfz-heidelberg.de >
2024-12-10 17:18:07 +01:00
45aefd24e5
renamed exporter API key to EXPORTER_API_KEY ( #252 )
2024-12-06 11:27:38 +01:00
122ff16bb1
fix: use verbis cache image instead of docker-hub ( #250 )
2024-11-12 09:58:17 +01:00
967e45624e
Add exporter configuration to focus ( #249 )
2024-11-05 15:46:00 +01:00
8cd5b93b95
Merge pull request #237 from samply/feat/ccp-ppi
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Feat/ccp ppi
2024-11-05 13:59:01 +01:00
52c24ee6fa
fix(fhir2sql): add the postgres connection string to focus ( #245 )
2024-11-05 13:34:36 +01:00
26712d3567
feat: add and set FOCUS_ENDPOINT_TYPE to support fhir2sql ( #244 )
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* add and set FOCUS_ENDPOINT_TYPE
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
---------
Co-authored-by: davidmscholz <david.scholz@dkfz-heidelberg.de >
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2024-10-30 15:21:15 +01:00
a4e292dd18
Merge pull request #241 from samply/develop
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feat: add focus tags in ccp and bbmri (#240 )
2024-10-23 07:24:06 +02:00
eea17c3478
fix: remove invalid beam-proxy tag and add it to focus instead ( #242 )
2024-10-22 16:48:48 +02:00
cf5230963c
feat: add focus tags in ccp and bbmri ( #240 )
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Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2024-10-21 11:00:01 +02:00
634d4e2a4b
Added comments explaining how things have been changed for local testing
2024-10-18 13:32:06 +02:00
bc24599c54
Beam suppressed
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Changes have been made so that the Bridgehead can run without Beam.
2024-10-18 11:15:18 +02:00
75089ab428
Merge pull request #221 from samply/develop
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Keep develop in sync with main
2024-10-15 14:30:15 +02:00
7aaee5e7d5
feat: add auto archiving action ( #238 )
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* feat: add auto archiving action
---------
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com >
2024-10-15 13:03:42 +02:00
3312ca8a64
feat: added blaze cql cache ( #236 )
2024-10-10 14:34:28 +02:00
23981062bb
Move ppi to id-management
2024-10-10 13:27:24 +02:00
8e7fe6851e
fix: use correct mainzelliste api key
2024-10-10 13:11:43 +02:00
760d599b7c
Add CCP-PPI
2024-10-10 12:56:36 +02:00
072ee348fc
fix: deactivate landingpage for KR project ( #234 )
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fix: deactivate landingpage for KR project
2024-10-09 09:24:27 +02:00
f328e40963
Merge pull request #233 from samply/fix/id-management-redirection
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Allow Usage of Centraxx Interface without login
2024-10-08 13:30:44 +02:00
599bcfcec4
Feature/send branch to healthchecks ( #232 )
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feature: log git branches to healthchecks and code refactoring
2024-10-02 07:53:20 +02:00
eb2955872f
fix: allow usage of centraxx interface without login
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Before this change CentraXX was redirected to the
central login servers then interacting with the id-management
2024-10-01 13:30:23 +02:00
24da24d05e
Traefik dashboard
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Deactivate traefik dashboard by default. Add trailing slash to PathPrefix to clarify the URL the dashboard is available at.
2024-10-01 10:40:24 +02:00
65359c2ee6
Feature/pilot projects backup ( #227 )
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add pilot projects
2024-09-12 10:04:53 +02:00
b1de62607f
Merge pull request #223 from samply/feat/add-dkfz-hector-ki-project
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Added DHKI project
2024-09-12 09:44:03 +02:00
969f1e7242
fix: remove accidental commit
2024-09-12 09:41:19 +02:00
77c870ab22
fix: fix bash path
2024-09-12 09:29:30 +02:00
