70aca8e99c
Wait longer for Blaze to start
2024-07-10 14:34:14 +02:00
b52931e46c
Pinned Blaze version
2024-07-02 14:11:34 +02:00
eb0f392e3c
Croatia is having problems with a slow starting Blaze, increase Focus retry count
2024-06-13 09:25:57 +02:00
a738f1468f
Fixed bug in CVS test logic
...
The -f test with a wildcard works OK if there is 0 or 1 CSV files but
breaks if there are 2 or more. The replacement uses ls to check if
there are any CSV files.
2024-06-07 16:08:16 +02:00
aa122d0bff
Shortened national node names in config
...
For ECDC, the Beam broker URL is very long, so the resulting Beam ID
can be longer than 64 characters, which is too much for the CSR
generation algorithm.
2024-05-17 11:44:37 +02:00
593f93fffc
Turned off obfuscation, because ECDC does not want this feature
2024-03-28 11:06:10 +01:00
4588960e19
Removed DKFZ URLs and certificates from EHDS2 branch
2024-03-27 16:08:32 +01:00
1b82207934
Migrated TransFAIR start logic from launch file to docker-compose
...
The start-up logic for TransFAIR is specific to the ECDC/EHDS2 Bridgehead,
and did not belong in the TransFAIR repo. This commit fixes that.
It also honours the change of the TransFAIR branch name for this
project, "ehds2".
2024-03-26 17:00:42 +01:00
4880c5cc9b
Remove dependancy on local blazectl image
2024-03-20 11:43:43 +01:00
b9b44d2530
Using standardized conditions for starting transfair
2024-03-19 09:07:56 +01:00
0d1f425df0
Auto-build focus and transfair
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This auto-build functionality is a workaround for a bug, described in README.
The README now has additional documentation for EHDS2.
The root certificate files have been expanded to contain certificates for
both the ECDC and the DKFZ setup.
2024-03-18 11:03:50 +01:00
7a33b54416
Merge branch 'ehds2' of https://github.com/samply/bridgehead into ehds2
2024-03-15 09:48:46 +01:00
40e15f4d84
Added extra stuff for EHDS2
...
This includes docker-compose files that include transfair plus
configuration variables specific to EHDS2.
2024-03-15 09:35:49 +01:00
d73e6ee7a3
Merge branch 'ehds2' of https://github.com/samply/bridgehead into ehds2
2024-02-14 11:18:37 +01:00
5bd9baaff7
Corrected things that led to errors during install
2024-02-14 11:16:39 +01:00
a629d87a5f
Inserted right urlInserted right urlInserted right urlInserted right urlInserted right urlInserted right urlInserted right urlInserted right urlInserted right url
2024-02-14 10:19:19 +01:00
7c2e9af947
Set up sensible volumes for TransFAIR
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Also gave instructions to copy over data file.
2024-02-13 14:00:21 +01:00
9459e1a979
Inserted ECDC-specific URLs and certificates
...
Also updated README to include instructions for manual Beam
registration.
2024-02-13 13:19:41 +01:00
d5760ed3d0
Modified instructions for ECDC
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Also included a template configuration file.
2024-02-12 16:40:32 +01:00
8af5cf3f01
Changes made for EHDS2
...
The EHDS2 project has initiated a use case for antibiotic resistance
under the control of the ECDC. This branch caters for the ECDC
requirements.
Specifically, it contains the ETL to transform the ECDC CSV format to
FHIR, plus additional configuration options that have been packaged into
the bbmri project.
2024-02-12 16:07:57 +01:00
5ba1a1a820
Fix variable visibility
2024-01-09 11:47:02 +01:00
c4018aae08
fixed gbn broker url
2024-01-09 07:53:44 +01:00
417c158435
GBN broker IDs
2024-01-08 16:26:07 +01:00
00030a6141
GBN variable names
2024-01-08 16:15:46 +01:00
29fb0e7099
Use focus tag depending on ENVIRONMENT
2024-01-08 15:49:46 +01:00
00cae67fa1
Add missing switch-case for gbn
2024-01-08 15:49:28 +01:00
2074461ee7
Use new variable ENVIRONMENT in /etc/bridgehead; defaults to "production".
2024-01-08 13:03:12 +01:00
954d46efb1
Added test root certs and logic for beam to use test brokers
2024-01-05 11:58:42 +01:00
a80a980cea
Merge pull request #140 from samply/feature/dnpm-node
...
Feature/dnpm node
2023-12-18 10:53:39 +01:00
f66f2755d8
Change landing page path override to /landing
2023-12-15 13:32:00 +00:00
d28a3ac889
Add dnpm node module to bbmri project
2023-12-15 09:46:40 +00:00
c02da838c7
Cleanup dnpm connect module
2023-12-15 09:41:11 +00:00
a4ce7f4eb6
Fix subsitution
2023-09-22 07:35:05 +00:00
49b5cb976a
Use GBN Broker for timesync if ERIC is disabled
2023-09-22 07:25:04 +00:00
6b1ea4c74e
Update gbn-setup.sh
2023-09-04 15:54:22 +02:00
8c8ebb9298
Added gbn broker url and e-mail
2023-09-04 15:30:44 +02:00
0536023ceb
Merge pull request #117 from samply/feature/bbmri_de
...
Added broker.bbmri.de root cert
2023-09-04 14:44:38 +02:00
3a3a9d09a9
Added broker.bbmri.de root cert
2023-09-04 14:30:52 +02:00
169ce2436f
fix dnpm connect env, from bool to string
2023-08-28 17:21:52 +00:00
bba8a03f9f
Use beam-connect:develop for DNPM
2023-08-24 12:22:43 +00:00
54d83736c3
Move BBMRI-ERIC, GBN to modules
2023-08-07 15:19:41 +02:00
b32a19a7b5
Make Directory Sync a module
2023-08-07 13:00:24 +02:00
dd0c28daf3
Add new dktk root cert
2023-06-30 07:50:18 +00:00
6d94ebd4eb
Add path stripper
2023-06-30 06:02:32 +00:00
a033386464
Absolute path for beam root cert
2023-06-28 15:38:05 +02:00
f0d423fcf7
Adapt to new beam app syntax
2023-06-28 11:48:47 +02:00
3304d2818d
Merge branch 'main' into feature/dnpm-connect
2023-06-28 11:45:45 +02:00
499360712b
Merge pull request #83 from samply/update/blaze-20
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Change blaze tag to latest
2023-06-28 11:43:57 +02:00
37ed5f5cd9
Merge pull request #88 from samply/new-beam-apikey-naming
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New beam-proxy api key syntax
2023-06-28 11:34:06 +02:00
2f20082d4c
Change focus tag to main
2023-06-19 13:32:51 +02:00
