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Author SHA1 Message Date
Martin Jurk 1b315bb837 spot no proxy env 2026-01-21 08:21:30 +01:00
Martin Jurk 9c022ffb88 refactor and clean up 2025-12-04 15:47:12 +01:00
Martin Jurk 6525bb45e4 refactor 2025-12-04 11:36:15 +01:00
martin.jurk c8ed52e73e endpoint with api key 2025-12-03 13:53:12 +01:00
Martin Jurk 371ed7f26e trafic error fixed 2025-12-01 16:41:45 +01:00
Martin Jurk 6ffa4260b9 volume changed /srv/docker/data 2025-12-01 13:31:52 +01:00
martin.jurk cdbc25270a missing Sites env error 2025-11-25 15:48:02 +01:00
Martin Jurk 02a3a87ebd script to optional use omics 2025-11-25 08:35:09 +01:00
Martin Jurk b8bef62ed7 wrong focus id 2025-11-24 15:28:24 +01:00
Martin Jurk 919e705d35 omic test env 2025-11-24 15:12:01 +01:00
Martin Jurk e4cfd41874 explorer error host fix 2025-11-21 10:26:28 +01:00
Martin Jurk bd648b027b test lens2 migration 2025-11-12 15:16:17 +01:00
Niklas Reimer ab6e05826f feat(dnpm): set timezone to Europe/Berlin (#359) 2025-11-12 10:25:20 +01:00
DavidCroftDKFZ 394dcc2567 Directory sync: token login and cron change (#351) 
The Directory team have requested that we allow token login to the
Directory, where a user uses LSAAI credentials to obtain a token from
the Directory, and then uses this to authenticate Directory sync. This
has been implemented via an environment variable, in an analogous way to
the already existing username/password method.

The default start time for the Directory sync has been shifted to 22:30,
to prevent conflicts with the Bridgehead auto-update.

Relevant changes have been made to the documentation.

Co-authored-by: Torben Brenner <76154651+torbrenner@users.noreply.github.com>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2025-11-11 09:43:08 +01:00
djuarezgf 58d3e6487c feat: add nNGM project (#340) 2025-11-06 16:47:50 +01:00
Pierre Delpy 230ff1debb feat: add PSCC 
* add pscc and prepare lens2 deployment
---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2025-11-05 15:18:00 +01:00
DavidCroftDKFZ 6dea7c8fef Directory sync: inherit host timezone (#354) 
Directory sync needs to be able to launch at specific times of day, and in order to do this in a predictable way, the timezone used inside the Docker container should be the same as the host. To do this, two files need to be mounted from the host. One file contains information about the time zone, the other file contains the file zone name.
 2025-11-05 11:02:26 +01:00
djuarezgf 66a1bd1122 docs: add initial documentation for Samply.Exporter and Samply.Teiler (#350) 2025-10-20 11:16:41 +02:00
Tim Schumacher 85957b3d48 Update focus tags: no project specific images anymore 2025-10-16 13:39:58 +02:00
Jan b31f2aff7d fix: don't run secret sync for minimal (#349) 2025-10-15 10:45:42 +02:00
Jan eab7700404 feat: add bridgehead check command (#342) 2025-09-30 11:47:51 +02:00
Jan 00b10f3ae6 fix: only pass CQL_PROJECTS_ENABLED to focus if set (#344) 2025-09-30 11:39:40 +02:00
Jan d1f5820d0f feat: allow cql queries for exliquid (#343) 2025-09-30 11:01:14 +02:00
Tim Schumacher 8a35785a24 feat: add scout module (#339) 2025-09-02 13:23:34 +02:00
Jan e0754853d8 feat(dnpm): change to new api-gateway image (#337) 2025-08-19 16:35:52 +02:00
Jan 4407a87644 chore: add more options to transfair (#325) 2025-08-19 16:32:41 +02:00
Jan d0851d80a0 fix: adapt to transfair cli changes (#319) 2025-08-19 15:48:05 +02:00
djuarezgf ada3226044 Replace hardcoded image: ...:develop references with version variables (#335) 
* added: Teiler Dashboard Version

* added: MTBA Version

* added: beam proxy tag version
 2025-07-30 11:21:10 +02:00
Paul-Christian Volkmer a2e7330cee docs: Add ghcr.io to URL list (#321) 2025-07-25 10:58:56 +02:00
Jan 9c8d0ee8f5 fix(dnpm): fix env subsitution (#333) 2025-07-25 10:58:07 +02:00
djuarezgf fcad7104f0 mtba: fallback to keycloak test server pending migration 2025-07-23 09:53:14 +02:00
djuarezgf 7e13e251f8 feat: migrate PSP to Authentik (#329) 2025-07-22 11:34:49 +02:00
Jan 2cfdc3ac3e feat(dnpm): allow setting custom dnpm image tag (#326) 2025-07-07 15:36:14 +02:00
djuarezgf 43b24c2a62 Fixed: Authentik URL for Opal (#328) 
* Fixed: Authentik URL for Opal

* Removed: Unnecessary OIDC config in CCE and BBMRI

* KR with basic auth instead of OIDC
 2025-07-07 15:35:54 +02:00
djuarezgf 8414604257 feat: migrate OIDC Configuration from Keycloak to Authentik (#327) 
* Change: Authentik instead of Keycloak in CCP

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2025-07-04 14:26:19 +02:00
Jan 4c6f9e0f13 feat: remove local rstudio (#322) 2025-06-27 10:55:53 +02:00
djuarezgf a1cdc2659d CCE Teiler and Export (#323) 
* Added Exporter to CCE

* Add Teiler to CCE

* Add EXPORTER_USER to adduser function
 2025-06-25 15:53:29 +02:00
Pierre Delpy 92bc0557a3 fix: add obfuscation and basic auth to spot in cce and itcc (#324) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2025-06-25 14:58:20 +02:00
djuarezgf 141f1f22d0 Use relative paths in teiler (#320) 2025-06-18 17:04:09 +02:00
Tobias Kussel b4a788e010 docs: close Exporter code block in readme (#318) 2025-06-16 14:23:59 +02:00
djuarezgf c33fbfc8bc fix: Create Exporter User only if Exporter is enabled (#317) 2025-06-11 09:34:41 +02:00
Enola Knezevic faa8abd4ee chore: update eric.acc.root.crt.pem (#316) 2025-06-10 16:48:22 +02:00
djuarezgf 7693289d4d docs: add Teiler and Exporter to the main README.md (#315) 
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
 2025-06-10 11:03:18 +02:00
djuarezgf d482324361 feat: add Teiler and Exporter in BBMRI (#312) 
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2025-06-05 16:55:03 +02:00
Martin Lablans b7a42f3d3b chore: externalize POSTGRES_TAG and bump postgres to 15.13 (#313) 2025-06-04 14:22:34 +02:00
Tim Schumacher fd013232f5 Cache public organoid dashboard SQL query (#309) 2025-05-23 15:26:59 +02:00
DavidCroftDKFZ eb52554892 docs: add faq (#288) 2025-05-22 18:10:40 +02:00
DavidCroftDKFZ 08c695e960 docs: Control import from Directory, improve README (#297) 2025-05-22 18:03:01 +02:00
DavidCroftDKFZ 1513fe1c6c Added section relating to clearing data from Blaze (#303) 2025-05-22 18:01:43 +02:00
djuarezgf af08a9fb08 chore: change some teiler variables (#307) 2025-05-20 16:24:24 +02:00