samply
/
bridgehead
mirror of https://github.com/samply/bridgehead.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity
1,004 Commits 47 Branches 0 Tags 103 MiB
Commit Graph

1004 Commits

Author SHA1 Message Date
DavidCroftDKFZ 364cf5f1c9 Added more detail to metadata feedback README 2025-02-06 16:20:54 +01:00
DavidCroftDKFZ e571681fce Added clarifying information to README 2025-02-06 16:04:59 +01:00
Gerhard Salvini 4f5f6b17e7 Added metadata feedback to README 2025-02-06 11:23:19 +01:00
Gerhard Salvini 146235236b Removed stuff accumulated during testing phase 
Most of the things added during testing were not necessary and they were
removed. This had the additional advantage that many files are now identical
to their equivalents in the develop branch, making the diff more manageable.
 2025-02-06 09:28:48 +01:00
Gerhard Salvini 0169435074 We are not using the Teiler in this pilot 2025-02-05 15:10:29 +01:00
Gerhard Salvini 6c71a83e70 Added startup script for metadata feedback 2025-02-05 14:30:24 +01:00
Gerhard Salvini ed95dff63e Merge branch 'develop' into metadata_fb 2025-02-05 14:02:47 +01:00
Gerhard Salvini 3841a98a3b Push hub URL into /etc/bridgehead/bbmri.conf 2025-02-05 13:50:12 +01:00
Jan 721627a78f
feat: migrate to new dnpm:dip node (#251) 
* feat: migrate to new dnpm:dip node

* hardcode dnpm connector type to broker

* use `SITE_NAME` for dnpm `LOCAL_SITE`

* host central targets in git

* dnpm: add goettingen to central targets

* dnpm: add uksh to central targets

* dnpm: replace named volumes with fs volumes

* chore: change dnpm images

* chore: pin mysql

* dnpm: Secure endpoints for ETL and p2p communications (#254)

* fix authup redirect (#262)

When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP. 

Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.

* Whitespace formatting

---------

Co-authored-by: Niklas <niklas@ytvwld.de>
Co-authored-by: Niklas Reimer <niklas@backbord.net>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2025-02-05 13:24:28 +01:00
DavidCroftDKFZ 710092c020 Autogenerate secrets for feedback-agent 2025-02-05 11:17:38 +01:00
Jan e08ff92401
Merge pull request #268 from samply/main 
Main backport
 2025-02-05 08:45:35 +01:00
DavidCroftDKFZ 9977578aa5 Changes for metadata feedback 
These changes fall into the following categories:

* Integration of the feedback components into Traefik.
* Small tweaks to Bridgehead parameters needed by metadata feedback.
* Reverting changes made to some files for testing purposes.
 2025-02-04 14:55:08 +01:00
Jan e3553370b6
feat: unify version handeling (#265) 2025-01-29 13:17:59 +01:00
Jan 1ad73d8f82
fix: properly load oidc secrets (#267) 2025-01-29 10:59:27 +01:00
Tobias Kussel 0b6fa439ba
Merge pull request #266 from samply/fix/docker-hub-link 
Fixed Docker Hub URL list link
 2025-01-29 09:52:26 +01:00
Martin Lablans 615990b92a
Use secret-sync for gitpassword (#257) 
---------

Co-authored-by: Tim Schumacher <tim@tschumacher.net>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
Co-authored-by: Tim Schumacher <tim.schumacher@dkfz-heidelberg.de>
 2025-01-28 14:53:49 +01:00
Tobias Kussel db950d6d87 Fixed Docker Hub URL list link 2025-01-28 08:59:57 +00:00
patrickskowronekdkfz 6a71da3dd1 docs: documentation for changing your configuration repository access token (#256) 2025-01-27 10:49:10 +01:00
patrickskowronekdkfz 138a1fa5f1 fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME (#259) 2025-01-27 10:49:10 +01:00
patrickskowronekdkfz 39a87bcf61 Update: Blaze to version 0.31 (#260) 2025-01-27 10:49:10 +01:00
Jan 655d0d24c7 fix: remove `restart: always` in compose files (#261) 2025-01-27 10:49:10 +01:00
patrickskowronekdkfz 910289079b
docs: documentation for changing your configuration repository access token (#256) 2025-01-21 09:35:25 +01:00
patrickskowronekdkfz 1003cd73cf
fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME (#259) 2025-01-21 09:30:20 +01:00
patrickskowronekdkfz 3d1105b97c
Update: Blaze to version 0.31 (#260) 2025-01-21 09:28:47 +01:00
Jan 5c28e704d2
fix: remove `restart: always` in compose files (#261) 2025-01-21 09:27:27 +01:00
Tobias Kussel df1ec21848
Merge pull request #246 from samply/develop 
set environment variables needed for the focus blaze-and-sql endpoint to work when fhir2sql is enabled
 2024-12-11 10:53:27 +01:00
patrickskowronekdkfz e3510363ad
fix: remove credentials from git remote, if update fails (#253) 
Signed-off-by: Patrick Skowronek <patrick.skowronek@dkfz-heidelberg.de>
 2024-12-10 17:18:07 +01:00
Enola Knezevic 45aefd24e5
renamed exporter API key to EXPORTER_API_KEY (#252) 2024-12-06 11:27:38 +01:00
patrickskowronekdkfz 122ff16bb1
fix: use verbis cache image instead of docker-hub (#250) 2024-11-12 09:58:17 +01:00
djuarezgf 967e45624e
Add exporter configuration to focus (#249) 2024-11-05 15:46:00 +01:00
Tobias Kussel 8cd5b93b95
Merge pull request #237 from samply/feat/ccp-ppi 
Feat/ccp ppi
 2024-11-05 13:59:01 +01:00
Jan 52c24ee6fa
fix(fhir2sql): add the postgres connection string to focus (#245) 2024-11-05 13:34:36 +01:00
davidmscholz 26712d3567
feat: add and set FOCUS_ENDPOINT_TYPE to support fhir2sql (#244) 
* add and set FOCUS_ENDPOINT_TYPE

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: davidmscholz <david.scholz@dkfz-heidelberg.de>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2024-10-30 15:21:15 +01:00
Pierre Delpy a4e292dd18
Merge pull request #241 from samply/develop 
feat: add focus tags in ccp and bbmri (#240)
 2024-10-23 07:24:06 +02:00
Enola Knezevic eea17c3478
fix: remove invalid beam-proxy tag and add it to focus instead (#242) 2024-10-22 16:48:48 +02:00
Pierre Delpy cf5230963c
feat: add focus tags in ccp and bbmri (#240) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2024-10-21 11:00:01 +02:00
Bridgehead User 634d4e2a4b Added comments explaining how things have been changed for local testing 2024-10-18 13:32:06 +02:00
Bridgehead User bc24599c54 Beam suppressed 
Changes have been made so that the Bridgehead can run without Beam.
 2024-10-18 11:15:18 +02:00
Pierre Delpy 75089ab428
Merge pull request #221 from samply/develop 
Keep develop in sync with main
 2024-10-15 14:30:15 +02:00
Pierre Delpy 7aaee5e7d5
feat: add auto archiving action (#238) 
* feat: add auto archiving action

---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2024-10-15 13:03:42 +02:00
patrickskowronekdkfz 3312ca8a64
feat: added blaze cql cache (#236) 2024-10-10 14:34:28 +02:00
Patrick Skowronek 23981062bb Move ppi to id-management 2024-10-10 13:27:24 +02:00
Patrick Skowronek 8e7fe6851e fix: use correct mainzelliste api key 2024-10-10 13:11:43 +02:00
Patrick Skowronek 760d599b7c Add CCP-PPI 2024-10-10 12:56:36 +02:00
Pierre Delpy 072ee348fc
fix: deactivate landingpage for KR project (#234) 
fix: deactivate landingpage for KR project
 2024-10-09 09:24:27 +02:00
Torben Brenner f328e40963
Merge pull request #233 from samply/fix/id-management-redirection 
Allow Usage of Centraxx Interface without login
 2024-10-08 13:30:44 +02:00
Pierre Delpy 599bcfcec4
Feature/send branch to healthchecks (#232) 
feature: log git branches to healthchecks and code refactoring
 2024-10-02 07:53:20 +02:00
Torben Brenner eb2955872f fix: allow usage of centraxx interface without login 
Before this change CentraXX was redirected to the
central login servers then interacting with the id-management
 2024-10-01 13:30:23 +02:00
Martin Lablans 24da24d05e
Traefik dashboard 
Deactivate traefik dashboard by default. Add trailing slash to PathPrefix to clarify the URL the dashboard is available at.
 2024-10-01 10:40:24 +02:00
Pierre Delpy 65359c2ee6
Feature/pilot projects backup (#227) 
add pilot projects
 2024-09-12 10:04:53 +02:00