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Author SHA1 Message Date
djuarezgf
4ddc906fcd CCE Teiler and Export (#323) 
* Added Exporter to CCE

* Add Teiler to CCE

* Add EXPORTER_USER to adduser function
 2026-01-28 13:40:50 +01:00
Pierre Delpy
fa36558d2e fix: add obfuscation and basic auth to spot in cce and itcc (#324) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2026-01-28 13:40:50 +01:00
djuarezgf
af8ad48e2c Use relative paths in teiler (#320) 2026-01-28 13:40:50 +01:00
Tobias Kussel
ecd8d60e99 docs: close Exporter code block in readme (#318) 2026-01-28 13:40:50 +01:00
djuarezgf
0a5da028db fix: Create Exporter User only if Exporter is enabled (#317) 2026-01-28 13:40:50 +01:00
Enola Knezevic
c45c6eb0ea chore: update eric.acc.root.crt.pem (#316) 2026-01-28 13:40:50 +01:00
djuarezgf
01173c9857 docs: add Teiler and Exporter to the main README.md (#315) 
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
 2026-01-28 13:40:50 +01:00
djuarezgf
ac0c37cba3 feat: add Teiler and Exporter in BBMRI (#312) 
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:40:50 +01:00
Martin Lablans
31b6c3bee3 chore: externalize POSTGRES_TAG and bump postgres to 15.13 (#313) 2026-01-28 13:40:50 +01:00
Tim Schumacher
8ddcfc123f Cache public organoid dashboard SQL query (#309) 2026-01-28 13:40:50 +01:00
DavidCroftDKFZ
9e23059ef2 docs: add faq (#288) 2026-01-28 13:40:50 +01:00
DavidCroftDKFZ
87e4ad595f docs: Control import from Directory, improve README (#297) 2026-01-28 13:40:50 +01:00
DavidCroftDKFZ
4d7ba813e0 Added section relating to clearing data from Blaze (#303) 2026-01-28 13:40:50 +01:00
djuarezgf
84f73fc1fb chore: change some teiler variables (#307) 2026-01-28 13:40:50 +01:00
djuarezgf
7d177a0b03 fix: add own url to teiler dashboard to make it offline compatible (#305) 2026-01-28 13:40:50 +01:00
Torben Brenner
5caaad26f2 fix: Ensure transfair can properly communicate with the fhir server for requests (#304) 2026-01-28 13:40:50 +01:00
Jan
b778da3f56 feat: allow transfair to talk to services behind the proxy (#296) 2026-01-28 13:40:50 +01:00
Jan
f9586f27b1 chore(transfair): update transfair config (#298) 2026-01-28 13:40:50 +01:00
Martin Lablans
8846efde85 Code review: Move to /tmp/bridgehead/... 2026-01-28 13:40:50 +01:00
Tim Schumacher
46ff2e9882 Use temp directory for secret sync cache 2026-01-28 13:40:50 +01:00
Jan
50263c767d chore(transfair): add option to disable tls verification (#295) 2026-01-28 13:40:50 +01:00
Enola Knezevic
7b3327ec24 chore: add BBMRI ERIC acceptance env (#294) 2026-01-28 13:40:50 +01:00
Jan
2c9a50149b fix: ssh-tunnel-setup.sh (#293) 2026-01-28 13:40:50 +01:00
Jan
e0c21625cc feat: ssh tunnel (#292) 
* Added ccp module for a ssh tunnel

Usage details under https://github.com/samply/ssh-tunnel

* chore: update ssh-tunnel image to harbor

* feat: ssh tunnel support diffrent port

* chore: fix indentation

* chore: move to top level modules

* docs: add ssh-tunnel docs

---------

Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de>
 2026-01-28 13:40:50 +01:00
Jan
5ac8042742 chore(transfair): add new gw option (#291) 2026-01-28 13:40:50 +01:00
Jan
3267dd088c feat: expose transfair via traefik (#290) 
Note: Requires a bridgehead install to generate the basic auth user
 2026-01-28 13:40:50 +01:00
Tim Schumacher
9cd5042ebc Fix GitLab token syncing for BBMRI 2026-01-28 13:40:50 +01:00
janskiba
265c7bee33 feat: add transfair setup to ccp 2026-01-28 13:40:50 +01:00
janskiba
d79e74ca90 chore!: update transfair config 2026-01-28 13:40:50 +01:00
Manoj Waikar
82841a6f04 Fix airgapped-blaze-compose.yml file. 
- BASE_URL & traefik settings
 2025-03-25 15:23:16 +01:00
Manoj Waikar
ba6f2c3b11 Modify container name (as it was a duplicate). 2025-03-24 09:50:06 +01:00
Manoj Waikar
39a4231c1f Add airgapped-blaze-{compose,setup} files in cce modules. 
- for testing out airgapped-blaze at VHIO
 2025-03-21 15:15:03 +01:00
Torben Brenner
6f3aba1eaa feat: support self-signed cert on ttp (#283) 2025-03-12 15:45:55 +01:00
Jan
82ced89b33 chore: unify blaze versioning and upgrade to 0.32 (#277) 2025-03-12 12:52:00 +01:00
Martin Lablans
5d94bac0e2 Mount queries_to_cache.conf readonly (#282) 2025-03-10 16:03:05 +01:00
Tim Schumacher
83555540f5 chore: update central Secret Sync proxy ID (#280) 2025-03-10 12:08:19 +01:00
Pierre Delpy
e396e00178 Fix/ccp cql cache (#279) 
* fix: adapt focus caching to new cql and add focus caching for cce and itcc

---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2025-03-07 12:20:38 +01:00
Tim Schumacher
ecb29830e4 Send the origin of /etc/bridgehead repo to Secret Sync 
This is to anticipate an upcoming change in Secret Sync that will allow it to support multiple GitLab servers, e.g. verbis GitLab and BBMRI GitLab.
 2025-03-05 11:04:22 +01:00
Torben Brenner
98121c17e8 Make Codeowners Rule apply to all Files in Repo 2025-02-20 17:28:38 +01:00
Torben Brenner
e38511e118 Add Codeowners File 2025-02-20 17:20:54 +01:00
Pierre Delpy
8334fac84d fix: use correct obds2fhir-rest image 
---------

Co-authored-by: Pierre Delpy <p.delpy@dkfz-heidelberg.de>
 2025-02-20 13:48:10 +01:00
Torben Brenner
8000356b57 docs: explicitly clone main branch (#269) 2025-02-07 11:21:43 +01:00
Torben Brenner
74d8e68d96 Merge pull request #258 from samply/feat/routine-connector 
feat: transFAIR
 2025-02-07 10:39:54 +01:00
Torben Brenner
c568a56651 refactor: set transfair log to info 2025-02-07 10:30:43 +01:00
Torben Brenner
8384143387 fix: make transfair reach the internal blaze stores 2025-02-07 09:17:17 +01:00
Torben Brenner
8fe73a8123 fix: support mode without ttp 2025-02-07 09:17:07 +01:00
Torben Brenner
bca63e82a9 fix: don't use return in transfairSetup 
For some reason the return not only exits transfairSetup, but also the
bridgehead script
 2025-02-06 15:43:37 +01:00
Jan
721627a78f feat: migrate to new dnpm:dip node (#251) 
* feat: migrate to new dnpm:dip node

* hardcode dnpm connector type to broker

* use `SITE_NAME` for dnpm `LOCAL_SITE`

* host central targets in git

* dnpm: add goettingen to central targets

* dnpm: add uksh to central targets

* dnpm: replace named volumes with fs volumes

* chore: change dnpm images

* chore: pin mysql

* dnpm: Secure endpoints for ETL and p2p communications (#254)

* fix authup redirect (#262)

When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP. 

Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.

* Whitespace formatting

---------

Co-authored-by: Niklas <niklas@ytvwld.de>
Co-authored-by: Niklas Reimer <niklas@backbord.net>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2025-02-05 13:24:28 +01:00
Jan
e08ff92401 Merge pull request #268 from samply/main 
Main backport
 2025-02-05 08:45:35 +01:00
Jan
e3553370b6 feat: unify version handeling (#265) 2025-01-29 13:17:59 +01:00