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Author SHA1 Message Date
Manoj Waikar
59d64c39a4 Add APP_spot_KEY env var under the beam-proxy section. (#358) 2026-01-28 13:40:51 +01:00
Niklas Reimer
2e78f5a033 feat(dnpm): set timezone to Europe/Berlin (#359) 2026-01-28 13:40:51 +01:00
DavidCroftDKFZ
06b44382f8 Directory sync: token login and cron change (#351) 
The Directory team have requested that we allow token login to the
Directory, where a user uses LSAAI credentials to obtain a token from
the Directory, and then uses this to authenticate Directory sync. This
has been implemented via an environment variable, in an analogous way to
the already existing username/password method.

The default start time for the Directory sync has been shifted to 22:30,
to prevent conflicts with the Bridgehead auto-update.

Relevant changes have been made to the documentation.

Co-authored-by: Torben Brenner <76154651+torbrenner@users.noreply.github.com>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2026-01-28 13:40:51 +01:00
djuarezgf
713a7f951a feat: add nNGM project (#340) 2026-01-28 13:40:50 +01:00
Pierre Delpy
d5fe238460 feat: add PSCC 
* add pscc and prepare lens2 deployment
---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:40:50 +01:00
DavidCroftDKFZ
863aa52f1d Directory sync: inherit host timezone (#354) 
Directory sync needs to be able to launch at specific times of day, and in order to do this in a predictable way, the timezone used inside the Docker container should be the same as the host. To do this, two files need to be mounted from the host. One file contains information about the time zone, the other file contains the file zone name.
 2026-01-28 13:40:50 +01:00
djuarezgf
7924dfab87 docs: add initial documentation for Samply.Exporter and Samply.Teiler (#350) 2026-01-28 13:40:50 +01:00
Tim Schumacher
4e134e7e95 Update focus tags: no project specific images anymore 2026-01-28 13:40:50 +01:00
Jan
2afbb99de6 fix: don't run secret sync for minimal (#349) 2026-01-28 13:40:50 +01:00
Jan
099ccac238 feat: add bridgehead check command (#342) 2026-01-28 13:40:50 +01:00
Jan
35d6b3d155 fix: only pass CQL_PROJECTS_ENABLED to focus if set (#344) 2026-01-28 13:40:50 +01:00
Jan
b7a47475a0 feat: allow cql queries for exliquid (#343) 2026-01-28 13:40:50 +01:00
Tim Schumacher
2029ca30ca feat: add scout module (#339) 2026-01-28 13:40:50 +01:00
Jan
4d3ee91acc feat(dnpm): change to new api-gateway image (#337) 2026-01-28 13:40:50 +01:00
Jan
f0095cf629 chore: add more options to transfair (#325) 2026-01-28 13:40:50 +01:00
Jan
f151c19f5e fix: adapt to transfair cli changes (#319) 2026-01-28 13:40:50 +01:00
djuarezgf
528c8c85ea Replace hardcoded image: ...:develop references with version variables (#335) 
* added: Teiler Dashboard Version

* added: MTBA Version

* added: beam proxy tag version
 2026-01-28 13:40:50 +01:00
Paul-Christian Volkmer
f43ab20e75 docs: Add ghcr.io to URL list (#321) 2026-01-28 13:40:50 +01:00
Jan
4c33c2d58e fix(dnpm): fix env subsitution (#333) 2026-01-28 13:40:50 +01:00
djuarezgf
001df6d384 mtba: fallback to keycloak test server pending migration 2026-01-28 13:40:50 +01:00
djuarezgf
ced6791f26 feat: migrate PSP to Authentik (#329) 2026-01-28 13:40:50 +01:00
Jan
6694c0a28e feat(dnpm): allow setting custom dnpm image tag (#326) 2026-01-28 13:40:50 +01:00
djuarezgf
b4d13bff62 Fixed: Authentik URL for Opal (#328) 
* Fixed: Authentik URL for Opal

* Removed: Unnecessary OIDC config in CCE and BBMRI

* KR with basic auth instead of OIDC
 2026-01-28 13:40:50 +01:00
djuarezgf
3d33fd6778 feat: migrate OIDC Configuration from Keycloak to Authentik (#327) 
* Change: Authentik instead of Keycloak in CCP

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:40:50 +01:00
Jan
281a1b2cb6 feat: remove local rstudio (#322) 2026-01-28 13:40:50 +01:00
djuarezgf
4ddc906fcd CCE Teiler and Export (#323) 
* Added Exporter to CCE

* Add Teiler to CCE

* Add EXPORTER_USER to adduser function
 2026-01-28 13:40:50 +01:00
Pierre Delpy
fa36558d2e fix: add obfuscation and basic auth to spot in cce and itcc (#324) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2026-01-28 13:40:50 +01:00
djuarezgf
af8ad48e2c Use relative paths in teiler (#320) 2026-01-28 13:40:50 +01:00
Tobias Kussel
ecd8d60e99 docs: close Exporter code block in readme (#318) 2026-01-28 13:40:50 +01:00
djuarezgf
0a5da028db fix: Create Exporter User only if Exporter is enabled (#317) 2026-01-28 13:40:50 +01:00
Enola Knezevic
c45c6eb0ea chore: update eric.acc.root.crt.pem (#316) 2026-01-28 13:40:50 +01:00
djuarezgf
01173c9857 docs: add Teiler and Exporter to the main README.md (#315) 
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
 2026-01-28 13:40:50 +01:00
djuarezgf
ac0c37cba3 feat: add Teiler and Exporter in BBMRI (#312) 
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:40:50 +01:00
Martin Lablans
31b6c3bee3 chore: externalize POSTGRES_TAG and bump postgres to 15.13 (#313) 2026-01-28 13:40:50 +01:00
Tim Schumacher
8ddcfc123f Cache public organoid dashboard SQL query (#309) 2026-01-28 13:40:50 +01:00
DavidCroftDKFZ
9e23059ef2 docs: add faq (#288) 2026-01-28 13:40:50 +01:00
DavidCroftDKFZ
87e4ad595f docs: Control import from Directory, improve README (#297) 2026-01-28 13:40:50 +01:00
DavidCroftDKFZ
4d7ba813e0 Added section relating to clearing data from Blaze (#303) 2026-01-28 13:40:50 +01:00
djuarezgf
84f73fc1fb chore: change some teiler variables (#307) 2026-01-28 13:40:50 +01:00
djuarezgf
7d177a0b03 fix: add own url to teiler dashboard to make it offline compatible (#305) 2026-01-28 13:40:50 +01:00
Torben Brenner
5caaad26f2 fix: Ensure transfair can properly communicate with the fhir server for requests (#304) 2026-01-28 13:40:50 +01:00
Jan
b778da3f56 feat: allow transfair to talk to services behind the proxy (#296) 2026-01-28 13:40:50 +01:00
Jan
f9586f27b1 chore(transfair): update transfair config (#298) 2026-01-28 13:40:50 +01:00
Martin Lablans
8846efde85 Code review: Move to /tmp/bridgehead/... 2026-01-28 13:40:50 +01:00
Tim Schumacher
46ff2e9882 Use temp directory for secret sync cache 2026-01-28 13:40:50 +01:00
Jan
50263c767d chore(transfair): add option to disable tls verification (#295) 2026-01-28 13:40:50 +01:00
Enola Knezevic
7b3327ec24 chore: add BBMRI ERIC acceptance env (#294) 2026-01-28 13:40:50 +01:00
Jan
2c9a50149b fix: ssh-tunnel-setup.sh (#293) 2026-01-28 13:40:50 +01:00
Jan
e0c21625cc feat: ssh tunnel (#292) 
* Added ccp module for a ssh tunnel

Usage details under https://github.com/samply/ssh-tunnel

* chore: update ssh-tunnel image to harbor

* feat: ssh tunnel support diffrent port

* chore: fix indentation

* chore: move to top level modules

* docs: add ssh-tunnel docs

---------

Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de>
 2026-01-28 13:40:50 +01:00
Jan
5ac8042742 chore(transfair): add new gw option (#291) 2026-01-28 13:40:50 +01:00