5d94bac0e2
Mount queries_to_cache.conf readonly ( #282 )
2025-03-10 16:03:05 +01:00
83555540f5
chore: update central Secret Sync proxy ID ( #280 )
2025-03-10 12:08:19 +01:00
e396e00178
Fix/ccp cql cache ( #279 )
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* fix: adapt focus caching to new cql and add focus caching for cce and itcc
---------
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2025-03-07 12:20:38 +01:00
ecb29830e4
Send the origin of /etc/bridgehead repo to Secret Sync
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This is to anticipate an upcoming change in Secret Sync that will allow it to support multiple GitLab servers, e.g. verbis GitLab and BBMRI GitLab.
2025-03-05 11:04:22 +01:00
98121c17e8
Make Codeowners Rule apply to all Files in Repo
2025-02-20 17:28:38 +01:00
e38511e118
Add Codeowners File
2025-02-20 17:20:54 +01:00
8334fac84d
fix: use correct obds2fhir-rest image
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---------
Co-authored-by: Pierre Delpy <p.delpy@dkfz-heidelberg.de >
2025-02-20 13:48:10 +01:00
8000356b57
docs: explicitly clone main branch ( #269 )
2025-02-07 11:21:43 +01:00
74d8e68d96
Merge pull request #258 from samply/feat/routine-connector
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feat: transFAIR
2025-02-07 10:39:54 +01:00
c568a56651
refactor: set transfair log to info
2025-02-07 10:30:43 +01:00
8384143387
fix: make transfair reach the internal blaze stores
2025-02-07 09:17:17 +01:00
8fe73a8123
fix: support mode without ttp
2025-02-07 09:17:07 +01:00
bca63e82a9
fix: don't use return in transfairSetup
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For some reason the return not only exits transfairSetup, but also the
bridgehead script
2025-02-06 15:43:37 +01:00
721627a78f
feat: migrate to new dnpm:dip node ( #251 )
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* feat: migrate to new dnpm:dip node
* hardcode dnpm connector type to broker
* use `SITE_NAME` for dnpm `LOCAL_SITE`
* host central targets in git
* dnpm: add goettingen to central targets
* dnpm: add uksh to central targets
* dnpm: replace named volumes with fs volumes
* chore: change dnpm images
* chore: pin mysql
* dnpm: Secure endpoints for ETL and p2p communications (#254 )
* fix authup redirect (#262 )
When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP.
Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.
* Whitespace formatting
---------
Co-authored-by: Niklas <niklas@ytvwld.de >
Co-authored-by: Niklas Reimer <niklas@backbord.net >
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com >
2025-02-05 13:24:28 +01:00
e08ff92401
Merge pull request #268 from samply/main
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Main backport
2025-02-05 08:45:35 +01:00
e3553370b6
feat: unify version handeling ( #265 )
2025-01-29 13:17:59 +01:00
1ad73d8f82
fix: properly load oidc secrets ( #267 )
2025-01-29 10:59:27 +01:00
0b6fa439ba
Merge pull request #266 from samply/fix/docker-hub-link
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Fixed Docker Hub URL list link
2025-01-29 09:52:26 +01:00
615990b92a
Use secret-sync for gitpassword ( #257 )
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---------
Co-authored-by: Tim Schumacher <tim@tschumacher.net >
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
Co-authored-by: Tim Schumacher <tim.schumacher@dkfz-heidelberg.de >
2025-01-28 14:53:49 +01:00
db950d6d87
Fixed Docker Hub URL list link
2025-01-28 08:59:57 +00:00
6a71da3dd1
docs: documentation for changing your configuration repository access token ( #256 )
2025-01-27 10:49:10 +01:00
138a1fa5f1
fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME ( #259 )
2025-01-27 10:49:10 +01:00
39a87bcf61
Update: Blaze to version 0.31 ( #260 )
2025-01-27 10:49:10 +01:00
655d0d24c7
fix: remove restart: always in compose files ( #261 )
2025-01-27 10:49:10 +01:00
fa0d9fb8b4
restrict additional blaze memory usage
2025-01-24 09:23:08 +00:00
139fcecabe
redo transfair setup
2025-01-23 13:27:42 +00:00
2058a7a5c9
update image url
2025-01-23 12:06:43 +00:00
47364f999e
wip: routine connector
2025-01-21 13:55:08 +00:00
910289079b
docs: documentation for changing your configuration repository access token ( #256 )
2025-01-21 09:35:25 +01:00
1003cd73cf
fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME ( #259 )
2025-01-21 09:30:20 +01:00
3d1105b97c
Update: Blaze to version 0.31 ( #260 )
2025-01-21 09:28:47 +01:00
5c28e704d2
fix: remove restart: always in compose files ( #261 )
2025-01-21 09:27:27 +01:00
df1ec21848
Merge pull request #246 from samply/develop
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set environment variables needed for the focus blaze-and-sql endpoint to work when fhir2sql is enabled
2024-12-11 10:53:27 +01:00
e3510363ad
fix: remove credentials from git remote, if update fails ( #253 )
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Signed-off-by: Patrick Skowronek <patrick.skowronek@dkfz-heidelberg.de >
2024-12-10 17:18:07 +01:00
45aefd24e5
renamed exporter API key to EXPORTER_API_KEY ( #252 )
2024-12-06 11:27:38 +01:00
122ff16bb1
fix: use verbis cache image instead of docker-hub ( #250 )
2024-11-12 09:58:17 +01:00
967e45624e
Add exporter configuration to focus ( #249 )
2024-11-05 15:46:00 +01:00
8cd5b93b95
Merge pull request #237 from samply/feat/ccp-ppi
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Feat/ccp ppi
2024-11-05 13:59:01 +01:00
52c24ee6fa
fix(fhir2sql): add the postgres connection string to focus ( #245 )
2024-11-05 13:34:36 +01:00
26712d3567
feat: add and set FOCUS_ENDPOINT_TYPE to support fhir2sql ( #244 )
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* add and set FOCUS_ENDPOINT_TYPE
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
---------
Co-authored-by: davidmscholz <david.scholz@dkfz-heidelberg.de >
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2024-10-30 15:21:15 +01:00
a4e292dd18
Merge pull request #241 from samply/develop
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feat: add focus tags in ccp and bbmri (#240 )
2024-10-23 07:24:06 +02:00
eea17c3478
fix: remove invalid beam-proxy tag and add it to focus instead ( #242 )
2024-10-22 16:48:48 +02:00
cf5230963c
feat: add focus tags in ccp and bbmri ( #240 )
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Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2024-10-21 11:00:01 +02:00
75089ab428
Merge pull request #221 from samply/develop
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Keep develop in sync with main
2024-10-15 14:30:15 +02:00
7aaee5e7d5
feat: add auto archiving action ( #238 )
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* feat: add auto archiving action
---------
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com >
2024-10-15 13:03:42 +02:00
3312ca8a64
feat: added blaze cql cache ( #236 )
2024-10-10 14:34:28 +02:00
23981062bb
Move ppi to id-management
2024-10-10 13:27:24 +02:00
8e7fe6851e
fix: use correct mainzelliste api key
2024-10-10 13:11:43 +02:00
760d599b7c
Add CCP-PPI
2024-10-10 12:56:36 +02:00
072ee348fc
fix: deactivate landingpage for KR project ( #234 )
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fix: deactivate landingpage for KR project
2024-10-09 09:24:27 +02:00
