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bridgehead
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1008 Commits

Author SHA1 Message Date
janskiba 68804dc71b feat: add transfair setup to ccp 2025-03-26 13:11:43 +01:00
janskiba e5aebfe382 chore!: update transfair config 2025-03-26 13:11:43 +01:00
Torben Brenner 6f3aba1eaa
feat: support self-signed cert on ttp (#283) 2025-03-12 15:45:55 +01:00
Jan 82ced89b33
chore: unify blaze versioning and upgrade to 0.32 (#277) 2025-03-12 12:52:00 +01:00
Martin Lablans 5d94bac0e2
Mount queries_to_cache.conf readonly (#282) 2025-03-10 16:03:05 +01:00
Tim Schumacher 83555540f5
chore: update central Secret Sync proxy ID (#280) 2025-03-10 12:08:19 +01:00
Pierre Delpy e396e00178
Fix/ccp cql cache (#279) 
* fix: adapt focus caching to new cql and add focus caching for cce and itcc

---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2025-03-07 12:20:38 +01:00
Tim Schumacher ecb29830e4 Send the origin of /etc/bridgehead repo to Secret Sync 
This is to anticipate an upcoming change in Secret Sync that will allow it to support multiple GitLab servers, e.g. verbis GitLab and BBMRI GitLab.
 2025-03-05 11:04:22 +01:00
Torben Brenner 98121c17e8 Make Codeowners Rule apply to all Files in Repo 2025-02-20 17:28:38 +01:00
Torben Brenner e38511e118 Add Codeowners File 2025-02-20 17:20:54 +01:00
Pierre Delpy 8334fac84d
fix: use correct obds2fhir-rest image 
---------

Co-authored-by: Pierre Delpy <p.delpy@dkfz-heidelberg.de>
 2025-02-20 13:48:10 +01:00
Torben Brenner 8000356b57
docs: explicitly clone main branch (#269) 2025-02-07 11:21:43 +01:00
Torben Brenner 74d8e68d96
Merge pull request #258 from samply/feat/routine-connector 
feat: transFAIR
 2025-02-07 10:39:54 +01:00
Torben Brenner c568a56651 refactor: set transfair log to info 2025-02-07 10:30:43 +01:00
Torben Brenner 8384143387 fix: make transfair reach the internal blaze stores 2025-02-07 09:17:17 +01:00
Torben Brenner 8fe73a8123 fix: support mode without ttp 2025-02-07 09:17:07 +01:00
Torben Brenner bca63e82a9 fix: don't use return in transfairSetup 
For some reason the return not only exits transfairSetup, but also the
bridgehead script
 2025-02-06 15:43:37 +01:00
Jan 721627a78f
feat: migrate to new dnpm:dip node (#251) 
* feat: migrate to new dnpm:dip node

* hardcode dnpm connector type to broker

* use `SITE_NAME` for dnpm `LOCAL_SITE`

* host central targets in git

* dnpm: add goettingen to central targets

* dnpm: add uksh to central targets

* dnpm: replace named volumes with fs volumes

* chore: change dnpm images

* chore: pin mysql

* dnpm: Secure endpoints for ETL and p2p communications (#254)

* fix authup redirect (#262)

When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP. 

Currently the url looks like this: https://myserver/authup//someurl
and produces an error. Manually removing the additional / fixes the issue.

* Whitespace formatting

---------

Co-authored-by: Niklas <niklas@ytvwld.de>
Co-authored-by: Niklas Reimer <niklas@backbord.net>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2025-02-05 13:24:28 +01:00
Jan e08ff92401
Merge pull request #268 from samply/main 
Main backport
 2025-02-05 08:45:35 +01:00
Jan e3553370b6
feat: unify version handeling (#265) 2025-01-29 13:17:59 +01:00
Jan 1ad73d8f82
fix: properly load oidc secrets (#267) 2025-01-29 10:59:27 +01:00
Tobias Kussel 0b6fa439ba
Merge pull request #266 from samply/fix/docker-hub-link 
Fixed Docker Hub URL list link
 2025-01-29 09:52:26 +01:00
Martin Lablans 615990b92a
Use secret-sync for gitpassword (#257) 
---------

Co-authored-by: Tim Schumacher <tim@tschumacher.net>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
Co-authored-by: Tim Schumacher <tim.schumacher@dkfz-heidelberg.de>
 2025-01-28 14:53:49 +01:00
Tobias Kussel db950d6d87 Fixed Docker Hub URL list link 2025-01-28 08:59:57 +00:00
patrickskowronekdkfz 6a71da3dd1 docs: documentation for changing your configuration repository access token (#256) 2025-01-27 10:49:10 +01:00
patrickskowronekdkfz 138a1fa5f1 fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME (#259) 2025-01-27 10:49:10 +01:00
patrickskowronekdkfz 39a87bcf61 Update: Blaze to version 0.31 (#260) 2025-01-27 10:49:10 +01:00
Jan 655d0d24c7 fix: remove `restart: always` in compose files (#261) 2025-01-27 10:49:10 +01:00
janskiba fa0d9fb8b4 restrict additional blaze memory usage 2025-01-24 09:23:08 +00:00
janskiba 139fcecabe redo transfair setup 2025-01-23 13:27:42 +00:00
janskiba 2058a7a5c9 update image url 2025-01-23 12:06:43 +00:00
janskiba 47364f999e wip: routine connector 2025-01-21 13:55:08 +00:00
patrickskowronekdkfz 910289079b
docs: documentation for changing your configuration repository access token (#256) 2025-01-21 09:35:25 +01:00
patrickskowronekdkfz 1003cd73cf
fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME (#259) 2025-01-21 09:30:20 +01:00
patrickskowronekdkfz 3d1105b97c
Update: Blaze to version 0.31 (#260) 2025-01-21 09:28:47 +01:00
Jan 5c28e704d2
fix: remove `restart: always` in compose files (#261) 2025-01-21 09:27:27 +01:00
Tobias Kussel df1ec21848
Merge pull request #246 from samply/develop 
set environment variables needed for the focus blaze-and-sql endpoint to work when fhir2sql is enabled
 2024-12-11 10:53:27 +01:00
patrickskowronekdkfz e3510363ad
fix: remove credentials from git remote, if update fails (#253) 
Signed-off-by: Patrick Skowronek <patrick.skowronek@dkfz-heidelberg.de>
 2024-12-10 17:18:07 +01:00
Enola Knezevic 45aefd24e5
renamed exporter API key to EXPORTER_API_KEY (#252) 2024-12-06 11:27:38 +01:00
patrickskowronekdkfz 122ff16bb1
fix: use verbis cache image instead of docker-hub (#250) 2024-11-12 09:58:17 +01:00
djuarezgf 967e45624e
Add exporter configuration to focus (#249) 2024-11-05 15:46:00 +01:00
Tobias Kussel 8cd5b93b95
Merge pull request #237 from samply/feat/ccp-ppi 
Feat/ccp ppi
 2024-11-05 13:59:01 +01:00
Jan 52c24ee6fa
fix(fhir2sql): add the postgres connection string to focus (#245) 2024-11-05 13:34:36 +01:00
davidmscholz 26712d3567
feat: add and set FOCUS_ENDPOINT_TYPE to support fhir2sql (#244) 
* add and set FOCUS_ENDPOINT_TYPE

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: davidmscholz <david.scholz@dkfz-heidelberg.de>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2024-10-30 15:21:15 +01:00
Pierre Delpy a4e292dd18
Merge pull request #241 from samply/develop 
feat: add focus tags in ccp and bbmri (#240)
 2024-10-23 07:24:06 +02:00
Enola Knezevic eea17c3478
fix: remove invalid beam-proxy tag and add it to focus instead (#242) 2024-10-22 16:48:48 +02:00
Pierre Delpy cf5230963c
feat: add focus tags in ccp and bbmri (#240) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2024-10-21 11:00:01 +02:00
Pierre Delpy 75089ab428
Merge pull request #221 from samply/develop 
Keep develop in sync with main
 2024-10-15 14:30:15 +02:00
Pierre Delpy 7aaee5e7d5
feat: add auto archiving action (#238) 
* feat: add auto archiving action

---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2024-10-15 13:03:42 +02:00
patrickskowronekdkfz 3312ca8a64
feat: added blaze cql cache (#236) 2024-10-10 14:34:28 +02:00