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Author SHA1 Message Date
Torben Brenner
6fe3bb0cc4 fix: use RECEIVER_PROXY_ID instead of $1 2025-10-21 10:23:56 +02:00
Torben Brenner
8770470e90 fix: added missing -f arg 2025-10-21 10:23:56 +02:00
Torben Brenner
efa38d78bc fix: don't attach to network use project instead 2025-10-21 10:23:56 +02:00
Torben Brenner
3c85bce8fe fix: add beam-send to project network 2025-10-21 10:23:56 +02:00
Torben Brenner
4246fbd162 fix: make a persistent send secret per bridgehead 2025-10-21 10:23:56 +02:00
Torben Brenner
24dec5a172 refactor: beam file send is only an executable command 2025-10-21 10:23:56 +02:00
Torben Brenner
afe1e37854 feat: added commands for beam-file send mode 2025-10-21 10:23:56 +02:00
Torben Brenner
ccd935701c fix: pass outdir path as separate token 2025-10-21 10:23:56 +02:00
Torben Brenner
332997963b fix: added quotes to data directory option 2025-10-21 10:23:56 +02:00
Torben Brenner
9ed11d63b2 fix: now properly reading variables for the check 2025-10-21 10:23:56 +02:00
Torben Brenner
80ec87a818 prototype: module for beam-file 2025-10-21 10:23:56 +02:00
djuarezgf
66a1bd1122 docs: add initial documentation for Samply.Exporter and Samply.Teiler (#350) 2025-10-20 11:16:41 +02:00
Tim Schumacher
85957b3d48 Update focus tags: no project specific images anymore 2025-10-16 13:39:58 +02:00
Jan
b31f2aff7d fix: don't run secret sync for minimal (#349) 2025-10-15 10:45:42 +02:00
Jan
eab7700404 feat: add bridgehead check command (#342) 2025-09-30 11:47:51 +02:00
Jan
00b10f3ae6 fix: only pass CQL_PROJECTS_ENABLED to focus if set (#344) 2025-09-30 11:39:40 +02:00
Jan
d1f5820d0f feat: allow cql queries for exliquid (#343) 2025-09-30 11:01:14 +02:00
Tim Schumacher
8a35785a24 feat: add scout module (#339) 2025-09-02 13:23:34 +02:00
Jan
e0754853d8 feat(dnpm): change to new api-gateway image (#337) 2025-08-19 16:35:52 +02:00
Jan
4407a87644 chore: add more options to transfair (#325) 2025-08-19 16:32:41 +02:00
Jan
d0851d80a0 fix: adapt to transfair cli changes (#319) 2025-08-19 15:48:05 +02:00
djuarezgf
ada3226044 Replace hardcoded image: ...:develop references with version variables (#335) 
* added: Teiler Dashboard Version

* added: MTBA Version

* added: beam proxy tag version
 2025-07-30 11:21:10 +02:00
Paul-Christian Volkmer
a2e7330cee docs: Add ghcr.io to URL list (#321) 2025-07-25 10:58:56 +02:00
Jan
9c8d0ee8f5 fix(dnpm): fix env subsitution (#333) 2025-07-25 10:58:07 +02:00
djuarezgf
fcad7104f0 mtba: fallback to keycloak test server pending migration 2025-07-23 09:53:14 +02:00
djuarezgf
7e13e251f8 feat: migrate PSP to Authentik (#329) 2025-07-22 11:34:49 +02:00
Jan
2cfdc3ac3e feat(dnpm): allow setting custom dnpm image tag (#326) 2025-07-07 15:36:14 +02:00
djuarezgf
43b24c2a62 Fixed: Authentik URL for Opal (#328) 
* Fixed: Authentik URL for Opal

* Removed: Unnecessary OIDC config in CCE and BBMRI

* KR with basic auth instead of OIDC
 2025-07-07 15:35:54 +02:00
djuarezgf
8414604257 feat: migrate OIDC Configuration from Keycloak to Authentik (#327) 
* Change: Authentik instead of Keycloak in CCP

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2025-07-04 14:26:19 +02:00
Jan
4c6f9e0f13 feat: remove local rstudio (#322) 2025-06-27 10:55:53 +02:00
djuarezgf
a1cdc2659d CCE Teiler and Export (#323) 
* Added Exporter to CCE

* Add Teiler to CCE

* Add EXPORTER_USER to adduser function
 2025-06-25 15:53:29 +02:00
Pierre Delpy
92bc0557a3 fix: add obfuscation and basic auth to spot in cce and itcc (#324) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2025-06-25 14:58:20 +02:00
djuarezgf
141f1f22d0 Use relative paths in teiler (#320) 2025-06-18 17:04:09 +02:00
Tobias Kussel
b4a788e010 docs: close Exporter code block in readme (#318) 2025-06-16 14:23:59 +02:00
djuarezgf
c33fbfc8bc fix: Create Exporter User only if Exporter is enabled (#317) 2025-06-11 09:34:41 +02:00
Enola Knezevic
faa8abd4ee chore: update eric.acc.root.crt.pem (#316) 2025-06-10 16:48:22 +02:00
djuarezgf
7693289d4d docs: add Teiler and Exporter to the main README.md (#315) 
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
 2025-06-10 11:03:18 +02:00
djuarezgf
d482324361 feat: add Teiler and Exporter in BBMRI (#312) 
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2025-06-05 16:55:03 +02:00
Martin Lablans
b7a42f3d3b chore: externalize POSTGRES_TAG and bump postgres to 15.13 (#313) 2025-06-04 14:22:34 +02:00
Tim Schumacher
fd013232f5 Cache public organoid dashboard SQL query (#309) 2025-05-23 15:26:59 +02:00
DavidCroftDKFZ
eb52554892 docs: add faq (#288) 2025-05-22 18:10:40 +02:00
DavidCroftDKFZ
08c695e960 docs: Control import from Directory, improve README (#297) 2025-05-22 18:03:01 +02:00
DavidCroftDKFZ
1513fe1c6c Added section relating to clearing data from Blaze (#303) 2025-05-22 18:01:43 +02:00
djuarezgf
af08a9fb08 chore: change some teiler variables (#307) 2025-05-20 16:24:24 +02:00
djuarezgf
b95f0efbe7 fix: add own url to teiler dashboard to make it offline compatible (#305) 2025-05-20 09:39:14 +02:00
Torben Brenner
99567e2b40 fix: Ensure transfair can properly communicate with the fhir server for requests (#304) 2025-05-19 17:01:37 +02:00
Jan
96ff6043a1 feat: allow transfair to talk to services behind the proxy (#296) 2025-05-09 13:52:33 +02:00
Jan
844ce3386e chore(transfair): update transfair config (#298) 2025-05-09 11:30:26 +02:00
Martin Lablans
9782bf66b6 Code review: Move to /tmp/bridgehead/... 2025-05-08 09:18:02 +02:00
Tim Schumacher
87f0e8ad7f Use temp directory for secret sync cache 2025-05-08 09:18:02 +02:00