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Author SHA1 Message Date
djuarezgfandManoj Waikar 713a7f951a feat: add nNGM project (#340) 2026-01-28 13:40:50 +01:00
Pierre DelpyManoj Waikarp.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>Jan
 		d5fe238460 feat: add PSCC 
* add pscc and prepare lens2 deployment
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Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:40:50 +01:00
DavidCroftDKFZandManoj Waikar 863aa52f1d Directory sync: inherit host timezone (#354) 
Directory sync needs to be able to launch at specific times of day, and in order to do this in a predictable way, the timezone used inside the Docker container should be the same as the host. To do this, two files need to be mounted from the host. One file contains information about the time zone, the other file contains the file zone name.
 2026-01-28 13:40:50 +01:00
djuarezgfandManoj Waikar 7924dfab87 docs: add initial documentation for Samply.Exporter and Samply.Teiler (#350) 2026-01-28 13:40:50 +01:00
Tim SchumacherandManoj Waikar 4e134e7e95 Update focus tags: no project specific images anymore 2026-01-28 13:40:50 +01:00
JanandManoj Waikar 2afbb99de6 fix: don't run secret sync for minimal (#349) 2026-01-28 13:40:50 +01:00
JanandManoj Waikar 099ccac238 feat: add bridgehead check command (#342) 2026-01-28 13:40:50 +01:00
JanandManoj Waikar 35d6b3d155 fix: only pass CQL_PROJECTS_ENABLED to focus if set (#344) 2026-01-28 13:40:50 +01:00
JanandManoj Waikar b7a47475a0 feat: allow cql queries for exliquid (#343) 2026-01-28 13:40:50 +01:00
Tim SchumacherandManoj Waikar 2029ca30ca feat: add scout module (#339) 2026-01-28 13:40:50 +01:00
JanandManoj Waikar 4d3ee91acc feat(dnpm): change to new api-gateway image (#337) 2026-01-28 13:40:50 +01:00
JanandManoj Waikar f0095cf629 chore: add more options to transfair (#325) 2026-01-28 13:40:50 +01:00
JanandManoj Waikar f151c19f5e fix: adapt to transfair cli changes (#319) 2026-01-28 13:40:50 +01:00
djuarezgfandManoj Waikar 528c8c85ea Replace hardcoded image: ...:develop references with version variables (#335) 
* added: Teiler Dashboard Version

* added: MTBA Version

* added: beam proxy tag version
 2026-01-28 13:40:50 +01:00
Paul-Christian VolkmerandManoj Waikar f43ab20e75 docs: Add ghcr.io to URL list (#321) 2026-01-28 13:40:50 +01:00
JanandManoj Waikar 4c33c2d58e fix(dnpm): fix env subsitution (#333) 2026-01-28 13:40:50 +01:00
djuarezgfandManoj Waikar 001df6d384 mtba: fallback to keycloak test server pending migration 2026-01-28 13:40:50 +01:00
djuarezgfandManoj Waikar ced6791f26 feat: migrate PSP to Authentik (#329) 2026-01-28 13:40:50 +01:00
JanandManoj Waikar 6694c0a28e feat(dnpm): allow setting custom dnpm image tag (#326) 2026-01-28 13:40:50 +01:00
djuarezgfandManoj Waikar b4d13bff62 Fixed: Authentik URL for Opal (#328) 
* Fixed: Authentik URL for Opal

* Removed: Unnecessary OIDC config in CCE and BBMRI

* KR with basic auth instead of OIDC
 2026-01-28 13:40:50 +01:00
djuarezgfManoj WaikarJan
 		3d33fd6778 feat: migrate OIDC Configuration from Keycloak to Authentik (#327) 
* Change: Authentik instead of Keycloak in CCP

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:40:50 +01:00
JanandManoj Waikar 281a1b2cb6 feat: remove local rstudio (#322) 2026-01-28 13:40:50 +01:00
djuarezgfandManoj Waikar 4ddc906fcd CCE Teiler and Export (#323) 
* Added Exporter to CCE

* Add Teiler to CCE

* Add EXPORTER_USER to adduser function
 2026-01-28 13:40:50 +01:00
Pierre DelpyManoj Waikarp.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 		fa36558d2e fix: add obfuscation and basic auth to spot in cce and itcc (#324) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2026-01-28 13:40:50 +01:00
djuarezgfandManoj Waikar af8ad48e2c Use relative paths in teiler (#320) 2026-01-28 13:40:50 +01:00
Tobias KusselandManoj Waikar ecd8d60e99 docs: close Exporter code block in readme (#318) 2026-01-28 13:40:50 +01:00
djuarezgfandManoj Waikar 0a5da028db fix: Create Exporter User only if Exporter is enabled (#317) 2026-01-28 13:40:50 +01:00
Enola KnezevicandManoj Waikar c45c6eb0ea chore: update eric.acc.root.crt.pem (#316) 2026-01-28 13:40:50 +01:00
djuarezgfManoj WaikarTobias Kussel
 		01173c9857 docs: add Teiler and Exporter to the main README.md (#315) 
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
 2026-01-28 13:40:50 +01:00
djuarezgfManoj WaikarJan
 		ac0c37cba3 feat: add Teiler and Exporter in BBMRI (#312) 
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2026-01-28 13:40:50 +01:00
Martin LablansandManoj Waikar 31b6c3bee3 chore: externalize POSTGRES_TAG and bump postgres to 15.13 (#313) 2026-01-28 13:40:50 +01:00
Tim SchumacherandManoj Waikar 8ddcfc123f Cache public organoid dashboard SQL query (#309) 2026-01-28 13:40:50 +01:00
DavidCroftDKFZandManoj Waikar 9e23059ef2 docs: add faq (#288) 2026-01-28 13:40:50 +01:00
DavidCroftDKFZandManoj Waikar 87e4ad595f docs: Control import from Directory, improve README (#297) 2026-01-28 13:40:50 +01:00
DavidCroftDKFZandManoj Waikar 4d7ba813e0 Added section relating to clearing data from Blaze (#303) 2026-01-28 13:40:50 +01:00
djuarezgfandManoj Waikar 84f73fc1fb chore: change some teiler variables (#307) 2026-01-28 13:40:50 +01:00
djuarezgfandManoj Waikar 7d177a0b03 fix: add own url to teiler dashboard to make it offline compatible (#305) 2026-01-28 13:40:50 +01:00
Torben BrennerandManoj Waikar 5caaad26f2 fix: Ensure transfair can properly communicate with the fhir server for requests (#304) 2026-01-28 13:40:50 +01:00
JanandManoj Waikar b778da3f56 feat: allow transfair to talk to services behind the proxy (#296) 2026-01-28 13:40:50 +01:00
JanandManoj Waikar f9586f27b1 chore(transfair): update transfair config (#298) 2026-01-28 13:40:50 +01:00
Martin LablansandManoj Waikar 8846efde85 Code review: Move to /tmp/bridgehead/... 2026-01-28 13:40:50 +01:00
Tim SchumacherandManoj Waikar 46ff2e9882 Use temp directory for secret sync cache 2026-01-28 13:40:50 +01:00
JanandManoj Waikar 50263c767d chore(transfair): add option to disable tls verification (#295) 2026-01-28 13:40:50 +01:00
Enola KnezevicandManoj Waikar 7b3327ec24 chore: add BBMRI ERIC acceptance env (#294) 2026-01-28 13:40:50 +01:00
JanandManoj Waikar 2c9a50149b fix: ssh-tunnel-setup.sh (#293) 2026-01-28 13:40:50 +01:00
JanManoj WaikarTobias Kussel
 		e0c21625cc feat: ssh tunnel (#292) 
* Added ccp module for a ssh tunnel

Usage details under https://github.com/samply/ssh-tunnel

* chore: update ssh-tunnel image to harbor

* feat: ssh tunnel support diffrent port

* chore: fix indentation

* chore: move to top level modules

* docs: add ssh-tunnel docs

---------

Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de>
 2026-01-28 13:40:50 +01:00
JanandManoj Waikar 5ac8042742 chore(transfair): add new gw option (#291) 2026-01-28 13:40:50 +01:00
JanandManoj Waikar 3267dd088c feat: expose transfair via traefik (#290) 
Note: Requires a bridgehead install to generate the basic auth user
 2026-01-28 13:40:50 +01:00
Tim SchumacherandManoj Waikar 9cd5042ebc Fix GitLab token syncing for BBMRI 2026-01-28 13:40:50 +01:00
janskibaandManoj Waikar 265c7bee33 feat: add transfair setup to ccp 2026-01-28 13:40:50 +01:00