djuarezgf
713a7f951a
feat: add nNGM project ( #340 )
2026-01-28 13:40:50 +01:00
Pierre Delpy
d5fe238460
feat: add PSCC
...
* add pscc and prepare lens2 deployment
---------
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2026-01-28 13:40:50 +01:00
DavidCroftDKFZ
863aa52f1d
Directory sync: inherit host timezone ( #354 )
...
Directory sync needs to be able to launch at specific times of day, and in order to do this in a predictable way, the timezone used inside the Docker container should be the same as the host. To do this, two files need to be mounted from the host. One file contains information about the time zone, the other file contains the file zone name.
2026-01-28 13:40:50 +01:00
djuarezgf
7924dfab87
docs: add initial documentation for Samply.Exporter and Samply.Teiler ( #350 )
2026-01-28 13:40:50 +01:00
Tim Schumacher
4e134e7e95
Update focus tags: no project specific images anymore
2026-01-28 13:40:50 +01:00
Jan
2afbb99de6
fix: don't run secret sync for minimal ( #349 )
2026-01-28 13:40:50 +01:00
Jan
099ccac238
feat: add bridgehead check command ( #342 )
2026-01-28 13:40:50 +01:00
Jan
35d6b3d155
fix: only pass CQL_PROJECTS_ENABLED to focus if set ( #344 )
2026-01-28 13:40:50 +01:00
Jan
b7a47475a0
feat: allow cql queries for exliquid ( #343 )
2026-01-28 13:40:50 +01:00
Tim Schumacher
2029ca30ca
feat: add scout module ( #339 )
2026-01-28 13:40:50 +01:00
Jan
4d3ee91acc
feat(dnpm): change to new api-gateway image ( #337 )
2026-01-28 13:40:50 +01:00
Jan
f0095cf629
chore: add more options to transfair ( #325 )
2026-01-28 13:40:50 +01:00
Jan
f151c19f5e
fix: adapt to transfair cli changes ( #319 )
2026-01-28 13:40:50 +01:00
djuarezgf
528c8c85ea
Replace hardcoded image: ...:develop references with version variables ( #335 )
...
* added: Teiler Dashboard Version
* added: MTBA Version
* added: beam proxy tag version
2026-01-28 13:40:50 +01:00
Paul-Christian Volkmer
f43ab20e75
docs: Add ghcr.io to URL list ( #321 )
2026-01-28 13:40:50 +01:00
Jan
4c33c2d58e
fix(dnpm): fix env subsitution ( #333 )
2026-01-28 13:40:50 +01:00
djuarezgf
001df6d384
mtba: fallback to keycloak test server pending migration
2026-01-28 13:40:50 +01:00
djuarezgf
ced6791f26
feat: migrate PSP to Authentik ( #329 )
2026-01-28 13:40:50 +01:00
Jan
6694c0a28e
feat(dnpm): allow setting custom dnpm image tag ( #326 )
2026-01-28 13:40:50 +01:00
djuarezgf
b4d13bff62
Fixed: Authentik URL for Opal ( #328 )
...
* Fixed: Authentik URL for Opal
* Removed: Unnecessary OIDC config in CCE and BBMRI
* KR with basic auth instead of OIDC
2026-01-28 13:40:50 +01:00
djuarezgf
3d33fd6778
feat: migrate OIDC Configuration from Keycloak to Authentik ( #327 )
...
* Change: Authentik instead of Keycloak in CCP
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
---------
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2026-01-28 13:40:50 +01:00
Jan
281a1b2cb6
feat: remove local rstudio ( #322 )
2026-01-28 13:40:50 +01:00
djuarezgf
4ddc906fcd
CCE Teiler and Export ( #323 )
...
* Added Exporter to CCE
* Add Teiler to CCE
* Add EXPORTER_USER to adduser function
2026-01-28 13:40:50 +01:00
Pierre Delpy
fa36558d2e
fix: add obfuscation and basic auth to spot in cce and itcc ( #324 )
...
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de >
2026-01-28 13:40:50 +01:00
djuarezgf
af8ad48e2c
Use relative paths in teiler ( #320 )
2026-01-28 13:40:50 +01:00
Tobias Kussel
ecd8d60e99
docs: close Exporter code block in readme ( #318 )
2026-01-28 13:40:50 +01:00
djuarezgf
0a5da028db
fix: Create Exporter User only if Exporter is enabled ( #317 )
2026-01-28 13:40:50 +01:00
Enola Knezevic
c45c6eb0ea
chore: update eric.acc.root.crt.pem ( #316 )
2026-01-28 13:40:50 +01:00
djuarezgf
01173c9857
docs: add Teiler and Exporter to the main README.md ( #315 )
...
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com >
2026-01-28 13:40:50 +01:00
djuarezgf
ac0c37cba3
feat: add Teiler and Exporter in BBMRI ( #312 )
...
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com >
2026-01-28 13:40:50 +01:00
Martin Lablans
31b6c3bee3
chore: externalize POSTGRES_TAG and bump postgres to 15.13 ( #313 )
2026-01-28 13:40:50 +01:00
Tim Schumacher
8ddcfc123f
Cache public organoid dashboard SQL query ( #309 )
2026-01-28 13:40:50 +01:00
DavidCroftDKFZ
9e23059ef2
docs: add faq ( #288 )
2026-01-28 13:40:50 +01:00
DavidCroftDKFZ
87e4ad595f
docs: Control import from Directory, improve README ( #297 )
2026-01-28 13:40:50 +01:00
DavidCroftDKFZ
4d7ba813e0
Added section relating to clearing data from Blaze ( #303 )
2026-01-28 13:40:50 +01:00
djuarezgf
84f73fc1fb
chore: change some teiler variables ( #307 )
2026-01-28 13:40:50 +01:00
djuarezgf
7d177a0b03
fix: add own url to teiler dashboard to make it offline compatible ( #305 )
2026-01-28 13:40:50 +01:00
Torben Brenner
5caaad26f2
fix: Ensure transfair can properly communicate with the fhir server for requests ( #304 )
2026-01-28 13:40:50 +01:00
Jan
b778da3f56
feat: allow transfair to talk to services behind the proxy ( #296 )
2026-01-28 13:40:50 +01:00
Jan
f9586f27b1
chore(transfair): update transfair config ( #298 )
2026-01-28 13:40:50 +01:00
Martin Lablans
8846efde85
Code review: Move to /tmp/bridgehead/...
2026-01-28 13:40:50 +01:00
Tim Schumacher
46ff2e9882
Use temp directory for secret sync cache
2026-01-28 13:40:50 +01:00
Jan
50263c767d
chore(transfair): add option to disable tls verification ( #295 )
2026-01-28 13:40:50 +01:00
Enola Knezevic
7b3327ec24
chore: add BBMRI ERIC acceptance env ( #294 )
2026-01-28 13:40:50 +01:00
Jan
2c9a50149b
fix: ssh-tunnel-setup.sh ( #293 )
2026-01-28 13:40:50 +01:00
Jan
e0c21625cc
feat: ssh tunnel ( #292 )
...
* Added ccp module for a ssh tunnel
Usage details under https://github.com/samply/ssh-tunnel
* chore: update ssh-tunnel image to harbor
* feat: ssh tunnel support diffrent port
* chore: fix indentation
* chore: move to top level modules
* docs: add ssh-tunnel docs
---------
Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de >
2026-01-28 13:40:50 +01:00
Jan
5ac8042742
chore(transfair): add new gw option ( #291 )
2026-01-28 13:40:50 +01:00
Jan
3267dd088c
feat: expose transfair via traefik ( #290 )
...
Note: Requires a bridgehead install to generate the basic auth user
2026-01-28 13:40:50 +01:00
Tim Schumacher
9cd5042ebc
Fix GitLab token syncing for BBMRI
2026-01-28 13:40:50 +01:00
janskiba
265c7bee33
feat: add transfair setup to ccp
2026-01-28 13:40:50 +01:00
