Commit Graph

1057 Commits

Author SHA1 Message Date
djuarezgf
790a90787e docs: add initial documentation for Samply.Exporter and Samply.Teiler (#350) 2026-01-28 13:52:38 +01:00
Tim Schumacher
e1bcaaea3d Update focus tags: no project specific images anymore 2026-01-28 13:52:38 +01:00
Jan
8f2fd1af1f fix: don't run secret sync for minimal (#349) 2026-01-28 13:52:38 +01:00
Jan
e440945f34 feat: add bridgehead check command (#342) 2026-01-28 13:52:38 +01:00
Jan
54d6fec7d1 fix: only pass CQL_PROJECTS_ENABLED to focus if set (#344) 2026-01-28 13:52:38 +01:00
Jan
313c3f65b3 feat: allow cql queries for exliquid (#343) 2026-01-28 13:52:38 +01:00
Tim Schumacher
d2df758017 feat: add scout module (#339) 2026-01-28 13:52:38 +01:00
Jan
6d7659c049 feat(dnpm): change to new api-gateway image (#337) 2026-01-28 13:52:38 +01:00
Jan
50ae129083 chore: add more options to transfair (#325) 2026-01-28 13:52:37 +01:00
Jan
31c588afc2 fix: adapt to transfair cli changes (#319) 2026-01-28 13:52:37 +01:00
djuarezgf
e728def9d4 Replace hardcoded image: ...:develop references with version variables (#335)
* added: Teiler Dashboard Version

* added: MTBA Version

* added: beam proxy tag version
2026-01-28 13:52:37 +01:00
Paul-Christian Volkmer
f4ed80a00c docs: Add ghcr.io to URL list (#321) 2026-01-28 13:52:37 +01:00
Jan
ed5f319d79 fix(dnpm): fix env subsitution (#333) 2026-01-28 13:52:37 +01:00
djuarezgf
5ce1f6391b mtba: fallback to keycloak test server pending migration 2026-01-28 13:52:37 +01:00
djuarezgf
3589dede55 feat: migrate PSP to Authentik (#329) 2026-01-28 13:52:37 +01:00
Jan
893f0332f9 feat(dnpm): allow setting custom dnpm image tag (#326) 2026-01-28 13:52:37 +01:00
djuarezgf
1b15a31c1b Fixed: Authentik URL for Opal (#328)
* Fixed: Authentik URL for Opal

* Removed: Unnecessary OIDC config in CCE and BBMRI

* KR with basic auth instead of OIDC
2026-01-28 13:52:37 +01:00
djuarezgf
9b3a21b0c3 feat: migrate OIDC Configuration from Keycloak to Authentik (#327)
* Change: Authentik instead of Keycloak in CCP

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
2026-01-28 13:52:37 +01:00
Jan
7cfa81d821 feat: remove local rstudio (#322) 2026-01-28 13:52:37 +01:00
djuarezgf
28fd775ba1 CCE Teiler and Export (#323)
* Added Exporter to CCE

* Add Teiler to CCE

* Add EXPORTER_USER to adduser function
2026-01-28 13:52:37 +01:00
Pierre Delpy
145b685d1c fix: add obfuscation and basic auth to spot in cce and itcc (#324)
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
2026-01-28 13:52:37 +01:00
djuarezgf
68b599e305 Use relative paths in teiler (#320) 2026-01-28 13:52:37 +01:00
Tobias Kussel
957514042c docs: close Exporter code block in readme (#318) 2026-01-28 13:52:37 +01:00
djuarezgf
99d76e7d08 fix: Create Exporter User only if Exporter is enabled (#317) 2026-01-28 13:52:37 +01:00
Enola Knezevic
d911698986 chore: update eric.acc.root.crt.pem (#316) 2026-01-28 13:52:37 +01:00
djuarezgf
949fe02f79 docs: add Teiler and Exporter to the main README.md (#315)
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
2026-01-28 13:52:37 +01:00
djuarezgf
b6a14da80b feat: add Teiler and Exporter in BBMRI (#312)
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
2026-01-28 13:52:37 +01:00
Martin Lablans
b4296349cd chore: externalize POSTGRES_TAG and bump postgres to 15.13 (#313) 2026-01-28 13:52:37 +01:00
Tim Schumacher
64a14a0048 Cache public organoid dashboard SQL query (#309) 2026-01-28 13:52:37 +01:00
DavidCroftDKFZ
3a2fd51bf5 docs: add faq (#288) 2026-01-28 13:52:37 +01:00
DavidCroftDKFZ
f54ef47f57 docs: Control import from Directory, improve README (#297) 2026-01-28 13:52:37 +01:00
DavidCroftDKFZ
b7cdacb00b Added section relating to clearing data from Blaze (#303) 2026-01-28 13:52:37 +01:00
djuarezgf
4b700f8c34 chore: change some teiler variables (#307) 2026-01-28 13:52:37 +01:00
djuarezgf
600131862c fix: add own url to teiler dashboard to make it offline compatible (#305) 2026-01-28 13:52:37 +01:00
Torben Brenner
97eb50b93f fix: Ensure transfair can properly communicate with the fhir server for requests (#304) 2026-01-28 13:52:37 +01:00
Jan
63f402269c feat: allow transfair to talk to services behind the proxy (#296) 2026-01-28 13:52:37 +01:00
Jan
95272dd7ac chore(transfair): update transfair config (#298) 2026-01-28 13:52:37 +01:00
Martin Lablans
f4b6c9aa84 Code review: Move to /tmp/bridgehead/... 2026-01-28 13:52:37 +01:00
Tim Schumacher
1e027b6952 Use temp directory for secret sync cache 2026-01-28 13:52:37 +01:00
Jan
5d5962ae2d chore(transfair): add option to disable tls verification (#295) 2026-01-28 13:52:37 +01:00
Enola Knezevic
689cc68e93 chore: add BBMRI ERIC acceptance env (#294) 2026-01-28 13:52:37 +01:00
Jan
beba01354d fix: ssh-tunnel-setup.sh (#293) 2026-01-28 13:52:37 +01:00
Jan
ce1665050c feat: ssh tunnel (#292)
* Added ccp module for a ssh tunnel

Usage details under https://github.com/samply/ssh-tunnel

* chore: update ssh-tunnel image to harbor

* feat: ssh tunnel support diffrent port

* chore: fix indentation

* chore: move to top level modules

* docs: add ssh-tunnel docs

---------

Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de>
2026-01-28 13:52:37 +01:00
Jan
acb7de11e7 chore(transfair): add new gw option (#291) 2026-01-28 13:52:37 +01:00
Jan
53bee0e5e7 feat: expose transfair via traefik (#290)
Note: Requires a bridgehead install to generate the basic auth user
2026-01-28 13:52:37 +01:00
Tim Schumacher
e00e371421 Fix GitLab token syncing for BBMRI 2026-01-28 13:52:37 +01:00
janskiba
9d96a2ddb0 feat: add transfair setup to ccp 2026-01-28 13:52:37 +01:00
janskiba
f198e18c70 chore!: update transfair config 2026-01-28 13:52:37 +01:00
Manoj Waikar
82841a6f04 Fix airgapped-blaze-compose.yml file.
- BASE_URL & traefik settings
2025-03-25 15:23:16 +01:00
Manoj Waikar
ba6f2c3b11 Modify container name (as it was a duplicate). 2025-03-24 09:50:06 +01:00