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Author SHA1 Message Date
Manoj Waikar 7dc9e2e663 Changes to make deployed CCE explorer work properly. (#368) 
* Changes to make deployed CCE explorer work properly.

In the lens environment section in services:
- add PUBLIC_SPOT_URL value
 2026-01-13 10:42:10 +01:00
Jan 85cfc2514d update beam proxy server used for oauth enrollment (#366) 2025-12-11 11:33:29 +01:00
Enola Knezevic dd3387c2f1 test version blaze (#364) 
This is the one we need urgently
 2025-12-01 12:54:57 +01:00
Enola Knezevic a5120ba75b obfuscate BBMRI ERIC way, test blaze version (#363) 2025-12-01 12:50:07 +01:00
Manoj Waikar d0c87b40a6 Use the cce-explorer:main image from docker hub (instead of ghcr). (#362) 2025-11-21 14:52:42 +01:00
Pierre Delpy 57f49ab5fc feat: migrate pscc to orange cloud broker (#361) 2025-11-21 10:42:21 +01:00
Manoj Waikar e2569f4737 Use the main image name for cce explorer. (#360) 
- instead of pr1 name
 2025-11-20 14:34:33 +01:00
Manoj Waikar 56a8aac326 Add APP_spot_KEY env var under the beam-proxy section. (#358) 2025-11-19 09:33:18 +01:00
Niklas Reimer ab6e05826f feat(dnpm): set timezone to Europe/Berlin (#359) 2025-11-12 10:25:20 +01:00
DavidCroftDKFZ 394dcc2567 Directory sync: token login and cron change (#351) 
The Directory team have requested that we allow token login to the
Directory, where a user uses LSAAI credentials to obtain a token from
the Directory, and then uses this to authenticate Directory sync. This
has been implemented via an environment variable, in an analogous way to
the already existing username/password method.

The default start time for the Directory sync has been shifted to 22:30,
to prevent conflicts with the Bridgehead auto-update.

Relevant changes have been made to the documentation.

Co-authored-by: Torben Brenner <76154651+torbrenner@users.noreply.github.com>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
 2025-11-11 09:43:08 +01:00
djuarezgf 58d3e6487c feat: add nNGM project (#340) 2025-11-06 16:47:50 +01:00
Pierre Delpy 230ff1debb feat: add PSCC 
* add pscc and prepare lens2 deployment
---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2025-11-05 15:18:00 +01:00
DavidCroftDKFZ 6dea7c8fef Directory sync: inherit host timezone (#354) 
Directory sync needs to be able to launch at specific times of day, and in order to do this in a predictable way, the timezone used inside the Docker container should be the same as the host. To do this, two files need to be mounted from the host. One file contains information about the time zone, the other file contains the file zone name.
 2025-11-05 11:02:26 +01:00
djuarezgf 66a1bd1122 docs: add initial documentation for Samply.Exporter and Samply.Teiler (#350) 2025-10-20 11:16:41 +02:00
Tim Schumacher 85957b3d48 Update focus tags: no project specific images anymore 2025-10-16 13:39:58 +02:00
Jan b31f2aff7d fix: don't run secret sync for minimal (#349) 2025-10-15 10:45:42 +02:00
Jan eab7700404 feat: add bridgehead check command (#342) 2025-09-30 11:47:51 +02:00
Jan 00b10f3ae6 fix: only pass CQL_PROJECTS_ENABLED to focus if set (#344) 2025-09-30 11:39:40 +02:00
Jan d1f5820d0f feat: allow cql queries for exliquid (#343) 2025-09-30 11:01:14 +02:00
Tim Schumacher 8a35785a24 feat: add scout module (#339) 2025-09-02 13:23:34 +02:00
Jan e0754853d8 feat(dnpm): change to new api-gateway image (#337) 2025-08-19 16:35:52 +02:00
Jan 4407a87644 chore: add more options to transfair (#325) 2025-08-19 16:32:41 +02:00
Jan d0851d80a0 fix: adapt to transfair cli changes (#319) 2025-08-19 15:48:05 +02:00
djuarezgf ada3226044 Replace hardcoded image: ...:develop references with version variables (#335) 
* added: Teiler Dashboard Version

* added: MTBA Version

* added: beam proxy tag version
 2025-07-30 11:21:10 +02:00
Paul-Christian Volkmer a2e7330cee docs: Add ghcr.io to URL list (#321) 2025-07-25 10:58:56 +02:00
Jan 9c8d0ee8f5 fix(dnpm): fix env subsitution (#333) 2025-07-25 10:58:07 +02:00
djuarezgf fcad7104f0 mtba: fallback to keycloak test server pending migration 2025-07-23 09:53:14 +02:00
djuarezgf 7e13e251f8 feat: migrate PSP to Authentik (#329) 2025-07-22 11:34:49 +02:00
Jan 2cfdc3ac3e feat(dnpm): allow setting custom dnpm image tag (#326) 2025-07-07 15:36:14 +02:00
djuarezgf 43b24c2a62 Fixed: Authentik URL for Opal (#328) 
* Fixed: Authentik URL for Opal

* Removed: Unnecessary OIDC config in CCE and BBMRI

* KR with basic auth instead of OIDC
 2025-07-07 15:35:54 +02:00
djuarezgf 8414604257 feat: migrate OIDC Configuration from Keycloak to Authentik (#327) 
* Change: Authentik instead of Keycloak in CCP

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>

---------

Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2025-07-04 14:26:19 +02:00
Jan 4c6f9e0f13 feat: remove local rstudio (#322) 2025-06-27 10:55:53 +02:00
djuarezgf a1cdc2659d CCE Teiler and Export (#323) 
* Added Exporter to CCE

* Add Teiler to CCE

* Add EXPORTER_USER to adduser function
 2025-06-25 15:53:29 +02:00
Pierre Delpy 92bc0557a3 fix: add obfuscation and basic auth to spot in cce and itcc (#324) 
Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
 2025-06-25 14:58:20 +02:00
djuarezgf 141f1f22d0 Use relative paths in teiler (#320) 2025-06-18 17:04:09 +02:00
Tobias Kussel b4a788e010 docs: close Exporter code block in readme (#318) 2025-06-16 14:23:59 +02:00
djuarezgf c33fbfc8bc fix: Create Exporter User only if Exporter is enabled (#317) 2025-06-11 09:34:41 +02:00
Enola Knezevic faa8abd4ee chore: update eric.acc.root.crt.pem (#316) 2025-06-10 16:48:22 +02:00
djuarezgf 7693289d4d docs: add Teiler and Exporter to the main README.md (#315) 
Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>
 2025-06-10 11:03:18 +02:00
djuarezgf d482324361 feat: add Teiler and Exporter in BBMRI (#312) 
Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>
 2025-06-05 16:55:03 +02:00
Martin Lablans b7a42f3d3b chore: externalize POSTGRES_TAG and bump postgres to 15.13 (#313) 2025-06-04 14:22:34 +02:00
Tim Schumacher fd013232f5 Cache public organoid dashboard SQL query (#309) 2025-05-23 15:26:59 +02:00
DavidCroftDKFZ eb52554892 docs: add faq (#288) 2025-05-22 18:10:40 +02:00
DavidCroftDKFZ 08c695e960 docs: Control import from Directory, improve README (#297) 2025-05-22 18:03:01 +02:00
DavidCroftDKFZ 1513fe1c6c Added section relating to clearing data from Blaze (#303) 2025-05-22 18:01:43 +02:00
djuarezgf af08a9fb08 chore: change some teiler variables (#307) 2025-05-20 16:24:24 +02:00
djuarezgf b95f0efbe7 fix: add own url to teiler dashboard to make it offline compatible (#305) 2025-05-20 09:39:14 +02:00
Torben Brenner 99567e2b40 fix: Ensure transfair can properly communicate with the fhir server for requests (#304) 2025-05-19 17:01:37 +02:00
Jan 96ff6043a1 feat: allow transfair to talk to services behind the proxy (#296) 2025-05-09 13:52:33 +02:00
Jan 844ce3386e chore(transfair): update transfair config (#298) 2025-05-09 11:30:26 +02:00